View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_high_6 (Length: 320)
Name: NF3311_high_6
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_high_6 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 42281780 - 42281486
Alignment:
| Q |
11 |
cataggattataagaacacttttgtcaccaatagaaatnnnnnnnnn-ctaagttacatctagaataattgtagcattgtattggagaaattcagtgtga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
42281780 |
cataggattataagaacacttttgtcaccaatagaaataaaaaaaaaactaagttacatctagaataattgtagcattgtataggacaaattcagtgtga |
42281681 |
T |
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| Q |
110 |
tggactagaaacctgtttattcaattcacgagttctacttgtgaattannnnnnngataattttaaacatggaaaatatctatgtatagtttcatcttca |
209 |
Q |
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| T |
42281680 |
tggactagaaacctgtttattcaattcacgagttctacttgtgaattatttttttgatacttttaaacatggaaaatatctatgtatagtttcatcttca |
42281581 |
T |
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| Q |
210 |
ttttgtggttgtggattcgattttttgatttacttatcacttatcattcttgaacatcatcattgtgtttccttatgaatgcacgcactgttgtc |
304 |
Q |
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| T |
42281580 |
ttttgtggttgtggattcgattttttgatttacttatcacttatcattcttcaacgtcatcattgtgtttccttatgaatgcacgcactgttgtc |
42281486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 76 - 292
Target Start/End: Complemental strand, 42255356 - 42255142
Alignment:
| Q |
76 |
aattgtagcattgtattggagaaattcagtgtgatggactagaa-acctgtttattcaattcacgagttctacttgtgaattannnnnnngataatttta |
174 |
Q |
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| T |
42255356 |
aattgtagcattgtattggacaacttcaggatgatggactagaacacatgtttattcatttcatgagttctacttgtgaattatttttt-gatgctttta |
42255258 |
T |
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| Q |
175 |
aacatggaaaatatctatgtatagtttcatcttcattttgtggttgtggattcgattttttgatttacttatcacttatcattcttgaacatcatcattg |
274 |
Q |
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| T |
42255257 |
aacatggaaaatatctattgttagtttcatcttcattttgcggttg--gatacgatcttttgatttatttatcacttatcattcttgaacgtcttcattg |
42255160 |
T |
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| Q |
275 |
tgtttccttatgaatgca |
292 |
Q |
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| T |
42255159 |
tgtttccttatgaatgca |
42255142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 42260797 - 42260658
Alignment:
| Q |
165 |
gataattttaaacatggaaaatatctatgtatagtttcatcttcattttgtggttgtggattcgattttttgatttacttatcacttatcattcttgaac |
264 |
Q |
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|||| |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
42260797 |
gatacttttaagcatggaaaatatctatggatagattcatcttcgttttgtggttgtggattcgatcttatgatttacttatcacttatcattcttgaac |
42260698 |
T |
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| Q |
265 |
atcatcattgtgtttccttatgaatgcacgcactgttgtc |
304 |
Q |
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| T |
42260697 |
gtcatcattgtgattccttataaatgtacacattgttgtc |
42260658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 42285932 - 42285866
Alignment:
| Q |
232 |
ttttgatttacttatcacttatcattcttgaacatcatcattgtgtttccttatgaatgcacgcact |
298 |
Q |
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|||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||| |||| |
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| T |
42285932 |
ttttgatttacttatcacttattattcttgatcgtcatcattgtgtttccttataaatgcacacact |
42285866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 42260874 - 42260817
Alignment:
| Q |
74 |
ataattgtagcattgtattggagaaattcagtgtgatggactagaaacctgtttattc |
131 |
Q |
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| T |
42260874 |
ataattgtagcaatgtaatggacaacttcatggtgatagactagaaacctgtttattc |
42260817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 304
Target Start/End: Complemental strand, 489632 - 489493
Alignment:
| Q |
165 |
gataattttaaacatggaaaatatctatgtatagtttcatcttcattttgtggttgtggattcgattttttgatttacttatcacttatcattcttgaac |
264 |
Q |
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|||| |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
489632 |
gatacttttaagcatggaaaatatctatggatagattcatcttcgttttgtggttgtggattcgatcttatgatttacttatcacttatcattcttgaac |
489533 |
T |
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| Q |
265 |
atcatcattgtgtttccttatgaatgcacgcactgttgtc |
304 |
Q |
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| T |
489532 |
gtcatcattgtgattccttataaatgtacacattgttgtc |
489493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 489709 - 489652
Alignment:
| Q |
74 |
ataattgtagcattgtattggagaaattcagtgtgatggactagaaacctgtttattc |
131 |
Q |
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|||||||||||| |||| |||| || |||| ||||| |||||||||||||||||||| |
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| T |
489709 |
ataattgtagcaatgtaatggacaacttcatggtgatagactagaaacctgtttattc |
489652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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