View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_high_8 (Length: 267)
Name: NF3311_high_8
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 50880292 - 50880155
Alignment:
| Q |
17 |
agatgctgccatggttgttgaagttaagaagttattgctactgtttttgtgaaatgcttgtttgattcaattcaatcactgttaaaagattgttttatgt |
116 |
Q |
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| T |
50880292 |
agatgctgccatggttgttgaagttaagaagttattgctactgtttttgtgaaatgcttgtttgattcaattcaatcactgttaaaagattgttttatgt |
50880193 |
T |
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| Q |
117 |
aattgttgattcttgtatactccactgtgtataacgaa |
154 |
Q |
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| T |
50880192 |
aattgttgattcttgtatactccactgtgtataacgaa |
50880155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 11348187 - 11348269
Alignment:
| Q |
17 |
agatgctgccatggttgttgaagttaagaagttattgctactgtttttgtgaaatgcttgtttgattcaattcaatcactgtt |
99 |
Q |
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| T |
11348187 |
agatgctgccatggttgttgaagttaaggagttattgctactgcttttgtgaaatgtttgcttgattcaattcaatcactgtt |
11348269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 21728337 - 21728274
Alignment:
| Q |
17 |
agatgctgccatggttgttgaagttaagaagttattgctactgtttttgtgaaatgcttgtttg |
80 |
Q |
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| T |
21728337 |
agatgctgccatggttgttgaagttaagaagttcttgctactgtgtttgtgaaatgcttgtttg |
21728274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 48081067 - 48081192
Alignment:
| Q |
26 |
catggttgttgaagttaagaagttattgctactgtttttgtgaaatgcttgtttgattcaattcaatcactgttaaaagattgttttatgtaattgttga |
125 |
Q |
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| T |
48081067 |
catggttgttgaagttaaggagttattgttactgtttttgtgaaatgcttgtttgattcaattcaatcaccgttaaaagattgttttctgtaattgttga |
48081166 |
T |
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| Q |
126 |
ttcttgtatactccactgtgtataac |
151 |
Q |
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| T |
48081167 |
ttcttgtatactccactgtgtataac |
48081192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 36808393 - 36808319
Alignment:
| Q |
74 |
ttgtttgattcaattcaatcactgttaaaagattgttttatgtaattgttgattcttgtatactccactgtgtat |
148 |
Q |
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| T |
36808393 |
ttgtttgattcaattcaatcactcttgaaagattgttctgtgtaattgttgattcttgtatactccattgtgtat |
36808319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 18852100 - 18852157
Alignment:
| Q |
17 |
agatgctgccatggttgttgaagttaagaagttattgctactgtttttgtgaaatgct |
74 |
Q |
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| T |
18852100 |
agatgctgccatggttgttgaagttaaggagtgattgctactgttgttgtgcaatgct |
18852157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 13277804 - 13277877
Alignment:
| Q |
73 |
cttgtttgattcaattcaatcactgttaaaagattgttttatgtaattgttgattcttgtatactccactgtgtataacgaa |
154 |
Q |
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| T |
13277804 |
cttgtttgattcaattcaatcact--------attgttttcggtaattgttgatttttgtatactccactgtgtataacgaa |
13277877 |
T |
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