View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_low_1 (Length: 774)
Name: NF3311_low_1
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 27 - 310
Target Start/End: Complemental strand, 43188795 - 43188512
Alignment:
| Q |
27 |
gtttgaagttttgttgtaaatatttagtgaaatgagctatttacttttgtaattgaaatatatagaattttaagtattgttttgctctacataaaagagg |
126 |
Q |
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| T |
43188795 |
gtttgaagttttgttgtaaatatttagtgaaatgagctatttacttttgtaattgaaatatatagaattttaagtattgttttgctctacataaaagagg |
43188696 |
T |
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| Q |
127 |
tcttattttgcttatttatgatcttttaacaggttaacagggaaatgatgggtgtgatagaatcacttcggcgactggctgaacaacaggaagaacagat |
226 |
Q |
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| T |
43188695 |
tcttattttgcttatttatgatcttttaacaggttaacacggaaatgatgggtgtgatagaatcacttcggcgacaggctgaacaacaggaagaatagat |
43188596 |
T |
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| Q |
227 |
ggaccacaaactataaaatcctcctaaagtgggaaaattgtacgtggatcactttggtacattgtttactatggattactcgct |
310 |
Q |
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| T |
43188595 |
gaaccacaaactataaaatcctcctaaagtgggaaaattgtacgcggattactttggtacattgtttactatggattactcgct |
43188512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 320 - 512
Target Start/End: Complemental strand, 43188473 - 43188281
Alignment:
| Q |
320 |
gtaaagagaaaatgataaatagaatgaattgagttcattgattgtatatgatgaagtaggcaaaacaactttacttgaagcttctcgcgaatgatgtgac |
419 |
Q |
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| T |
43188473 |
gtaaagagaaaatgataaatagaatgaattgagttcattgattgtatatgatgaagtaggcaaaacaactttacttgaagcttctcgcgaatgatgtgac |
43188374 |
T |
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| Q |
420 |
aattgacaccaatatgttttgtgtgttcatgtacgcaaaggttggccgtgatgtgacacaaagaccgactataacagtaaaggagtgctggtg |
512 |
Q |
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| T |
43188373 |
aattgacaccaatatgttttgtgcgttcatgtacgcaaaggttggccgtgatgtgacacaaagaccgactatcacagtaaaggagtgctggtg |
43188281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 558 - 766
Target Start/End: Complemental strand, 43188280 - 43188082
Alignment:
| Q |
558 |
ggatttcagaagtggtggaatggaagctagatccctatatccatccggattccaaataggaacaaatgatgctaacatgttttattgaacgctaactgat |
657 |
Q |
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| T |
43188280 |
ggatttcagaagtggtggaatggaagctagatccctatatccatccggattccaaataggaacaaatgatgctaacatgttttattgaacgccaactgat |
43188181 |
T |
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| Q |
658 |
gaaagaatcaccaaaaaatacacaaaatccagcagttgagcaccgagatataagacaagtagctcagtaagagtcactaaatgctttctagttgtaacaa |
757 |
Q |
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| T |
43188180 |
gaaagaatcacca----------aaaatccagcagttgagcaccgagatataagacaagtagctcaataagagtcactaaatgctttctagttgtaacaa |
43188091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 43190884 - 43190776
Alignment:
| Q |
121 |
aagaggtcttattttgcttatttatgatcttttaacaggttaacagggaaatgatgggtgtgatagaatcacttcggcgactggctgaacaacaggaaga |
220 |
Q |
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| T |
43190884 |
aagaggtctaattttgcttatttatgatcttttaacaggttaacagggaaatgatgggtgtgatagaaacactccagcgacaggctgaacaacaggaaga |
43190785 |
T |
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| Q |
221 |
acagatgga |
229 |
Q |
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| T |
43190784 |
acagatgga |
43190776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 43182382 - 43182335
Alignment:
| Q |
324 |
agagaaaatgataaatagaatgaattgagttcattgattgtatatgat |
371 |
Q |
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| T |
43182382 |
agagaaaatgatgaatagaatgaattgagttcattgattgtaaatgat |
43182335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 43190951 - 43190889
Alignment:
| Q |
27 |
gtttgaagttttgttgtaaatatttagtgaaatgagctatttacttttgtaattgaaatatat |
89 |
Q |
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|||||||||||||||| |||||||||||||||||||||| | |||||||||| | ||||||| |
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| T |
43190951 |
gtttgaagttttgttgcaaatatttagtgaaatgagctaatagcttttgtaatagcaatatat |
43190889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 43196677 - 43196839
Alignment:
| Q |
47 |
tatttagtgaaatgagctatttacttttgtaattgaaatatatagaattttaagtattgttttgctctacataaaagaggtcttattttgcttatttatg |
146 |
Q |
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| T |
43196677 |
tatttagtgaagcaagctattgacttttgtaatttcaatttattcaatatgaagctttgttttgctctgcatgaaaaaggtcttactttgcttatttctg |
43196776 |
T |
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| Q |
147 |
atcttttaacaggttaacagggaaatgatgggtgtgatagaatcacttcggcgactggctgaaca |
211 |
Q |
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|||| || |||| |||||||||||||||||||| ||||||||||| | || || ||||||||| |
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| T |
43196777 |
ttctt--aataggtaaacagggaaatgatgggtgtcatagaatcactccagcaacaggctgaaca |
43196839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 19106571 - 19106614
Alignment:
| Q |
150 |
ttttaacaggttaacagggaaatgatgggtgtgatagaatcact |
193 |
Q |
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| T |
19106571 |
ttttaacaggttaatagagaaatgatgggtgtcatagaatcact |
19106614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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