View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3311_low_10 (Length: 238)
Name: NF3311_low_10
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_low_10 |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold1142 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22394007 - 22394243
Alignment:
| Q |
1 |
acttcatcacaggtccatactattcttattatccaagctaaccacaccttaataaaatcaccatgaaaatgtcttcgaatcaaacacattgttttatgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
22394007 |
acttcatcacaggtccatactattcttattatccaagctaaccacaccttaataaaatcaccttgaaaatgtcttcgaatcaaacacattgttttttgtg |
22394106 |
T |
|
| Q |
101 |
cacgtaaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttagaaatctataccaacaatgaagaaaataaattttacttccaactaattt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
22394107 |
cacataaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttagaaatctattccaacaatgaagaacataaattttacttccaactaattt |
22394206 |
T |
|
| Q |
201 |
tcatttttatgatatgcaattagttggaggtctctgc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22394207 |
tcatttttatgatatgcaattagttggaggtctctgc |
22394243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52390 - 52154
Alignment:
| Q |
1 |
acttcatcacaggtccatactattcttattatccaagctaaccacaccttaataaaatcaccatgaaaatgtcttcgaatcaaacacattgttttatgtg |
100 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
52390 |
acttcttcacaggtccatactattctaattgtccaagctaaccacaccttaataaaatcaccttgaaaatgtcttcgaatcaaacacattgttttctgtg |
52291 |
T |
|
| Q |
101 |
cacgtaaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttagaaatctataccaacaatgaagaaaataaattttacttccaactaattt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
52290 |
cacataaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttagaaatctattccaacaatgaagaacataaattttacttccaactaattt |
52191 |
T |
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| Q |
201 |
tcatttttatgatatgcaattagttggaggtctctgc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52190 |
tcatttttatgatatgcaattagttggaggtctctgc |
52154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27349694 - 27349927
Alignment:
| Q |
1 |
acttcatcacaggtccatactattcttattatccaagctaaccacaccttaataaaatcaccatgaaaatgtcttcgaatcaaacacattgttttatgtg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27349694 |
acttcttcacaggtccatactattcttattatccaagctaaccacaccttaataaaatcaccttgaaaatgtcttcgaatcaaacacattgttttatgtg |
27349793 |
T |
|
| Q |
101 |
cacgtaaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttagaaatctataccaacaatgaagaaaataaattttacttccaactaattt |
200 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | || | | ||| ||||||||| |
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| T |
27349794 |
cacataaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttgtaaatctataccaacaatgaacata--aacatatgctt-taactaattt |
27349890 |
T |
|
| Q |
201 |
tcatttttatgatatgcaattagttggaggtctctgc |
237 |
Q |
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| ||||||||||||||||||||||||||||||||||| |
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| T |
27349891 |
tgatttttatgatatgcaattagttggaggtctctgc |
27349927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27379032 - 27379265
Alignment:
| Q |
1 |
acttcatcacaggtccatactattcttattatccaagctaaccacaccttaataaaatcaccatgaaaatgtcttcgaatcaaacacattgttttatgtg |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27379032 |
acttcttcacaggtccatactattcatattatccaagctaaccacaccttaataaaatcaccttgaaaatgtcttcgaatcaaacacattgttttatgtg |
27379131 |
T |
|
| Q |
101 |
cacgtaaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttagaaatctataccaacaatgaagaaaataaattttacttccaactaattt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | || | | ||| ||||||||| |
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| T |
27379132 |
cacataaaaatgaaacaaacacctgaggtagaaatcagtagcaggtgcttgtaaatctataccaacaatgaacata--aacatatgctt-taactaattt |
27379228 |
T |
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| Q |
201 |
tcatttttatgatatgcaattagttggaggtctctgc |
237 |
Q |
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| ||||||||||||||||||||||||||||||||||| |
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| T |
27379229 |
tgatttttatgatatgcaattagttggaggtctctgc |
27379265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 28135287 - 28135325
Alignment:
| Q |
192 |
aactaattttcatttttatgatatgcaattagttggagg |
230 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
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| T |
28135287 |
aactaatttacatttttatgatatgcaattagttggagg |
28135325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 26628516 - 26628568
Alignment:
| Q |
34 |
caagctaaccacaccttaataaaatcaccatgaaaatgtcttcgaatcaaaca |
86 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| | ||| || |||||||||| |
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| T |
26628516 |
caagctaaccacacctgaatacaatcaccatgatagtgtatttgaatcaaaca |
26628568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 28005124 - 28005168
Alignment:
| Q |
191 |
caactaattttcatttttatgatatgcaattagttggaggtctct |
235 |
Q |
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|
|||||||||| |||||| ||| |||||||||||||||||| |||| |
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| T |
28005124 |
caactaatttacattttcatgctatgcaattagttggagggctct |
28005168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 28054834 - 28054862
Alignment:
| Q |
202 |
catttttatgatatgcaattagttggagg |
230 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
28054834 |
catttttatgatatgcaattagttggagg |
28054862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 28065259 - 28065287
Alignment:
| Q |
202 |
catttttatgatatgcaattagttggagg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
28065259 |
catttttatgatatgcaattagttggagg |
28065287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1142 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 1346 - 1385
Alignment:
| Q |
191 |
caactaattttcatttttatgatatgcaattagttggagg |
230 |
Q |
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|||||||||| |||||||||| |||||||||||||||||| |
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| T |
1346 |
caactaatttacatttttatggtatgcaattagttggagg |
1385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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