View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_low_13 (Length: 218)
Name: NF3311_low_13
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 43233251 - 43233445
Alignment:
| Q |
17 |
caagtttgtttaggtgtccaatatcagc---aatacatagaggattaccaattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaa |
113 |
Q |
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| T |
43233251 |
caagtttgtttaggtgtccaatatcagcagcaatacatagaggattaccaattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaa |
43233350 |
T |
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| Q |
114 |
ttttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttgacttgaagtctacggtataagtttatttttcttctctc |
208 |
Q |
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| T |
43233351 |
ttttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttgacttgaagtctacggtataagtttatttttcttctctc |
43233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 31982922 - 31982982
Alignment:
| Q |
72 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagt |
132 |
Q |
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| T |
31982922 |
tactcatacgttttgaatctaatgtttttctttcaattgtaactttgtcacacctgcaagt |
31982982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 8024261 - 8024397
Alignment:
| Q |
72 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
171 |
Q |
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| T |
8024261 |
tactcatacgttttgaatctaatgtttttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
8024360 |
T |
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| Q |
172 |
cttgaagtctacggtataagtttatttttcttctctc |
208 |
Q |
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| T |
8024361 |
cttgaagtctatgctacaagtttatttttcttctctc |
8024397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 18647484 - 18647620
Alignment:
| Q |
72 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
171 |
Q |
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|||||||| |||| |||| |||| ||||||||||| |||| |||||| | |||||||||| |||||||||||||| ||| ||||||||| ||||||| |
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| T |
18647484 |
tactcatacgttttgaatctaatgattttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
18647583 |
T |
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| Q |
172 |
cttgaagtctacggtataagtttatttttcttctctc |
208 |
Q |
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| T |
18647584 |
cttgaagtctatgctacaagtttatttttcttctctc |
18647620 |
T |
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