View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_low_4 (Length: 358)
Name: NF3311_low_4
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 174 - 343
Target Start/End: Complemental strand, 3804941 - 3804772
Alignment:
| Q |
174 |
ggtgatagaaggaaatcatgttaatggaaaagtggcagttgggaagagtaaaggaggatggaaaactgcatacatcttgttaggtactctaacctaatca |
273 |
Q |
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| T |
3804941 |
ggtgatagaaggaaatcatgttaatggaaaaatggcaattgggaagagaaaaggaggatggaaaactgcatacatcttgctaggtactgtaaactaatca |
3804842 |
T |
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| Q |
274 |
ttaattgtttgactcgtcatcatcattatatagacatggtaattgtaattaaatgaactaagtggaaatt |
343 |
Q |
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| T |
3804841 |
ttaattatttgactcatcattatcaatatatatacatggtaattgtaattaaatgaactaagtggaaatt |
3804772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 343
Target Start/End: Original strand, 395774 - 395934
Alignment:
| Q |
180 |
agaaggaaatcatgttaatggaaaagtggcagttgggaagagtaaaggaggatggaaaactgcatacatcttgttaggtactctaacctaatcattaatt |
279 |
Q |
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| T |
395774 |
agaaggaaatcatgtcaatggagaagtggcagatggaaagagtaaaggaggatggacaactgcatacatcttgctaggtactataagctaatcat---tt |
395870 |
T |
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| Q |
280 |
gtttgactcgtcatcatcattatatagacatggtaattgtaattaaatgaactaagtggaaatt |
343 |
Q |
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| T |
395871 |
gtttgattcatcattatcattatatatacatggtaattgtaattaaatgaactaagttgaaatt |
395934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3805094 - 3805008
Alignment:
| Q |
17 |
tgaagcagctgaggtcagttagttagttagttagttattctcggtgaatgttgttaacattgccattttcaaaccaagtgaaggattcgtc |
107 |
Q |
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| T |
3805094 |
tgaagcagctgaggtcggttagttagtta----gttattcttggtgaatgtcgttaacattgccattttcgaaccaagtgaaggattcgtc |
3805008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 395650 - 395709
Alignment:
| Q |
34 |
gttagttagttagttagttattctcggtgaatgttgttaacattgccattttcaaaccaa |
93 |
Q |
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| T |
395650 |
gttagttagttagttagttattcttggtgaatgtcgttaacatcgccatttgccaaccaa |
395709 |
T |
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