View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_low_7 (Length: 269)
Name: NF3311_low_7
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 13347156 - 13347408
Alignment:
| Q |
1 |
tgaaaaagcacttgattccaaaacaaaaatacaatacatcaaaaacatatatcaataacttatcttattcatttgctctgaaaaattaacataggaattg |
100 |
Q |
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| T |
13347156 |
tgaaaaagcacttgattccaaaacaaaaatacaatacatcaaaaacatatatcaataacttatcttattcatttgttctgaaaaattaacataggaattg |
13347255 |
T |
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| Q |
101 |
tagtattcaatcaacaataaaactttaagcttttatttttctt-aaaacaagaccaaattcataaaaacggcacgtataatatctagtttcacatcatct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |
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| T |
13347256 |
tagtattcaatcaacaataaaactttaagcttttatttttcttaaaaacaagaccaaattcataacaa-aacacatatgatatctagtttcacatcatct |
13347354 |
T |
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| Q |
200 |
caatctggctaccacgcttattcttcgtggtggccgcaacttcaacatcttcat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13347355 |
caatctggctaccacgcttattcttcgtggtggccgcaacttcaacatcttcat |
13347408 |
T |
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