View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3311_low_9 (Length: 238)

Name: NF3311_low_9
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3311_low_9
NF3311_low_9
[»] chr3 (5 HSPs)
chr3 (1-225)||(27348988-27349211)
chr3 (1-220)||(27390047-27390265)
chr3 (1-225)||(27378326-27378549)
chr3 (13-146)||(19484364-19484499)
chr3 (175-220)||(19474757-19474802)
[»] scaffold0043 (5 HSPs)
scaffold0043 (2-223)||(52875-53099)
scaffold0043 (182-219)||(30133-30170)
scaffold0043 (4-81)||(30173-30250)
scaffold0043 (182-219)||(44991-45028)
scaffold0043 (4-81)||(45031-45108)
[»] chr2 (1 HSPs)
chr2 (2-223)||(22393297-22393521)
[»] scaffold1142 (1 HSPs)
scaffold1142 (36-223)||(224-410)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27349211 - 27348988
Alignment:
Q  1 ttattagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaacatatttaagtgggtagc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  27349211 ttattaatctgagttgtttcctgagaggctacattatcaatatcttcaatacttaacctgacactctgcacaaaatgaaaaacatatttaagtgggtagt 27349112  T
Q  101 ataattcaattcctatgttgaaaaagatacaaaagaataaaaagggaaactaccttttgttgaggggnnnnnnnttgactatcttggtcattctttgttc 200  Q
    |||||| ||||||| ||||||||||||  ||  ||| ||||||||| || | ||||||||| | |         |||| |||||||||||||||||||||    
T  27349111 ataattaaattcctttgttgaaaaagagtcatgagagtaaaaagggtaa-tgccttttgtttaagatcaactaattgaatatcttggtcattctttgttc 27349013  T
Q  201 ctgacgtagaaccctcttgaatgat 225  Q
    |||||||||||||||||||||||||    
T  27349012 ctgacgtagaaccctcttgaatgat 27348988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27390047 - 27390265
Alignment:
Q  1 ttattagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaacatatttaagtgggtagc 100  Q
    |||||||||||||||||||| |||||| || ||  ||||| |||||||| |||| ||  || |||||||| ||||||||||| | |||||||||||||||    
T  27390047 ttattagtctgagttgtttcatgagagtctccaagatcaacatcttcaaaacttgactggatactctgcataaaatgaaaaagaaatttaagtgggtagc 27390146  T
Q  101 ataattcaattcctatgttgaaaaagatacaaaagaataaaaagggaaactaccttttgttgaggggnnnnnnnttgactatcttggtcattctttgttc 200  Q
    || ||||||||||||||||||||||||  |||| ||||||||||||  | | ||||||||| ||| |       |||| ||||||| ||||| |||||||    
T  27390147 atgattcaattcctatgttgaaaaagagtcaaaggaataaaaaggggta-tgccttttgtttaggagcaggtaattgaatatcttgatcattttttgttc 27390245  T
Q  201 ctgacgtagaaccctcttga 220  Q
    | ||||||||||||||||||    
T  27390246 ccgacgtagaaccctcttga 27390265  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27378549 - 27378326
Alignment:
Q  1 ttattagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaacatatttaagtgggtagc 100  Q
    |||||| ||||||||| ||| |||||| |  ||  ||||| |||||||| |||| || |||  ||||  | |||| |||||  |||||||||||||||||    
T  27378549 ttattaatctgagttggttcatgagagtcaccaagatcaacatcttcaaaacttgacttgatcctctaaataaaaggaaaatgatatttaagtgggtagc 27378450  T
Q  101 ataattcaattcctatgttgaaaaagatacaaaagaataaaaagggaaactaccttttgttgaggggnnnnnnnttgactatcttggtcattctttgttc 200  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||| || | ||||||||| | |||       |||| |||||||||||||||||| ||    
T  27378449 ataattcaattgctatgttgaaaaagagtcaaaagaataaaaagggtaa-tgccttttgtttaagggaaactaattgaatatcttggtcattctttgatc 27378351  T
Q  201 ctgacgtagaaccctcttgaatgat 225  Q
    |||||||||||||||||||||||||    
T  27378350 ctgacgtagaaccctcttgaatgat 27378326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 19484364 - 19484499
Alignment:
Q  13 gttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaaca--tatttaagtgggtagcataattcaat 110  Q
    ||||||||||| ||| || ||  ||||| |||||||| | || || | |||||||||| ||||||||||| |  ||||||| |||||||||||||| |||    
T  19484364 gttgtttcctgggagtctccaagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaat 19484463  T
Q  111 tcctatgttgaaaaagatacaaaagaataaaaaggg 146  Q
    | |||||||||||||||  |||| ||||||||||||    
T  19484464 tgctatgttgaaaaagagtcaaaggaataaaaaggg 19484499  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 19474802 - 19474757
Alignment:
Q  175 ttgactatcttggtcattctttgttcctgacgtagaaccctcttga 220  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||    
T  19474802 ttgaatatcttggtcattttttgttcctgacgtagaaccctcttga 19474757  T

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Target: scaffold0043 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 52875 - 53099
Alignment:
Q  2 tattagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaacatat----ttaagtgggt 97  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    ||||||||||    
T  52875 tattagtctgagatgtttcctgagaggcaacattatcaatatcttcaatacttaacctgacactctgcacaaaatgataaacatatttaattaagtgggt 52974  T
Q  98 agcataattcaattcctatgttgaaaaagatacaaaagaataaaaagggaaactaccttttgttgaggggnnnnnnnttgactatcttggtcattctttg 197  Q
    || |||||| ||||||| ||||||||||||  ||  ||| ||||||||| || | ||||||||| | |         |||| ||||||||||||||||||    
T  52975 agtataattaaattcctttgttgaaaaagagtcatgagagtaaaaagggtaa-tgccttttgtttaagatcaactaattgaatatcttggtcattctttg 53073  T
Q  198 ttcctgacgtagaaccctcttgaatg 223  Q
    ||||||||||||||||||||||||||    
T  53074 ttcctgacgtagaaccctcttgaatg 53099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 30170 - 30133
Alignment:
Q  182 tcttggtcattctttgttcctgacgtagaaccctcttg 219  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  30170 tcttggtcattttttgttcctgacgtagaaccctcttg 30133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 30250 - 30173
Alignment:
Q  4 ttagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaa 81  Q
    ||||||||||||||||| |||||| || ||  ||||| |||||||| |||| || ||| |||||||| ||||||||||    
T  30250 ttagtctgagttgtttcatgagagtctccaagatcaacatcttcaatacttgacttgatactctgcataaaatgaaaa 30173  T

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Target: scaffold0043; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 45028 - 44991
Alignment:
Q  182 tcttggtcattctttgttcctgacgtagaaccctcttg 219  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  45028 tcttggtcattttttgttcctgacgtagaaccctcttg 44991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 45108 - 45031
Alignment:
Q  4 ttagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaa 81  Q
    ||||||||||||||||| |||||| || ||  ||||| |||||||| |||| || ||| |||||||| ||||||||||    
T  45108 ttagtctgagttgtttcatgagagtctccaagatcaacatcttcaatacttgacttgatactctgcataaaatgaaaa 45031  T

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Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 22393521 - 22393297
Alignment:
Q  2 tattagtctgagttgtttcctgagaggctacattatcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaacatat----ttaagtgggt 97  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    ||||||||||    
T  22393521 tattagtctgagatgtttcctgagaggcaacattatcaatatcttcaatacttaacctgacactctgcacaaaatgataaacatatttaattaagtgggt 22393422  T
Q  98 agcataattcaattcctatgttgaaaaagatacaaaagaataaaaagggaaactaccttttgttgaggggnnnnnnnttgactatcttggtcattctttg 197  Q
    || |||||| ||||||| ||||||||||||  ||  ||| ||||||||| || | ||||||||| | |         |||| ||||||||||||||||||    
T  22393421 agtataattaaattcctttgttgaaaaagagtcatgagagtaaaaagggtaa-tgccttttgtttaagatcaactaattgaatatcttggtcattctttg 22393323  T
Q  198 ttcctgacgtagaaccctcttgaatg 223  Q
    ||||||||||||||||||||||||||    
T  22393322 ttcctgacgtagaaccctcttgaatg 22393297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 410 - 224
Alignment:
Q  36 atcaatatcttcaagacttaacctgacactctgcacaaaatgaaaaacatatttaagtgggtagcataattcaattcctatgttgaaaaagatacaaaag 135  Q
    ||||| |||||||| |||| || |||   |||||| |||||| |||  |||||||||||||||||||||||||||| |||||||||||||||  || ||     
T  410 atcaacatcttcaaaacttgacttgatcatctgcataaaatggaaatgatatttaagtgggtagcataattcaattgctatgttgaaaaagagtcagaat 311  T
Q  136 aataaaaagggaaactaccttttgttgaggggnnnnnnnttgactatcttggtcattctttgttcctgacgtagaaccctcttgaatg 223  Q
    ||||||||||| || | ||||||||| | |         |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  310 aataaaaagggcaa-tgccttttgtttaagatcaactaattgaatatcttggtcattctttgttcctgacgtagaaccctcatgaatg 224  T

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