View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3312_high_3 (Length: 341)

Name: NF3312_high_3
Description: NF3312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3312_high_3
NF3312_high_3
[»] chr8 (8 HSPs)
chr8 (42-165)||(9311455-9311578)
chr8 (42-165)||(14817000-14817123)
chr8 (42-165)||(14828616-14828739)
chr8 (298-334)||(9311286-9311322)
chr8 (298-334)||(14816831-14816867)
chr8 (298-334)||(14828873-14828909)
chr8 (219-250)||(14816915-14816946)
chr8 (219-250)||(14828794-14828825)
[»] chr1 (6 HSPs)
chr1 (42-165)||(46015359-46015482)
chr1 (42-158)||(33332846-33332962)
chr1 (42-165)||(2939070-2939193)
chr1 (298-334)||(2938833-2938869)
chr1 (298-334)||(33333163-33333199)
chr1 (298-334)||(46015615-46015651)
[»] chr5 (1 HSPs)
chr5 (42-165)||(19718157-19718280)
[»] chr4 (3 HSPs)
chr4 (44-158)||(11039018-11039132)
chr4 (298-334)||(11038842-11038878)
chr4 (298-334)||(12096412-12096448)
[»] chr2 (4 HSPs)
chr2 (42-165)||(13810084-13810208)
chr2 (49-158)||(7190460-7190569)
chr2 (298-336)||(13810341-13810379)
chr2 (298-334)||(7190218-7190254)
[»] chr7 (2 HSPs)
chr7 (42-165)||(45087525-45087648)
chr7 (298-333)||(45087334-45087369)
[»] scaffold0029 (2 HSPs)
scaffold0029 (42-157)||(71273-71388)
scaffold0029 (298-334)||(71587-71623)
[»] chr6 (2 HSPs)
chr6 (50-165)||(269754-269869)
chr6 (42-94)||(20488854-20488906)
[»] chr3 (1 HSPs)
chr3 (298-336)||(39992251-39992289)
[»] scaffold0042 (1 HSPs)
scaffold0042 (298-331)||(91008-91041)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 9311578 - 9311455
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9311578 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatt 9311479  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    ||  ||||||||||||| ||||||    
T  9311478 tgggattattgtgaaatgggtctg 9311455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 14817123 - 14817000
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  14817123 ttggaggaattgatgaatgggtatgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaaat 14817024  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    ||  ||||||||||||| ||||||    
T  14817023 tgggattattgtgaaatgggtctg 14817000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 14828616 - 14828739
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  14828616 ttggaggaattgatgaatgggtatgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaaat 14828715  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    ||  ||||||||||||| ||||||    
T  14828716 tgggattattgtgaaatgggtctg 14828739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 9311322 - 9311286
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  9311322 gagaggatttatgggttacttcatgatgatgatgatg 9311286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 14816867 - 14816831
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  14816867 gagaggatttatgggttacttcatgatgatgatgatg 14816831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 14828873 - 14828909
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  14828873 gagaggatttatgggttacttcatgatgatgatgatg 14828909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 250
Target Start/End: Complemental strand, 14816946 - 14816915
Alignment:
Q  219 ctttggaagagaggaagatgatgatgctgaaa 250  Q
    ||||||||||||||||||||||||||||||||    
T  14816946 ctttggaagagaggaagatgatgatgctgaaa 14816915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 14828794 - 14828825
Alignment:
Q  219 ctttggaagagaggaagatgatgatgctgaaa 250  Q
    ||||||||||||||||||||||||||||||||    
T  14828794 ctttggaagagaggaagatgatgatgctgaaa 14828825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 46015359 - 46015482
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46015359 ttgggggaattgattaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatt 46015458  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    || |||||||||||||| ||||||    
T  46015459 tggaattattgtgaaatgggtctg 46015482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 33332846 - 33332962
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||    
T  33332846 ttggggaaattgatgaatgggtctgagatttgtgttttttagctaccatttattaattttgttcttggttttgaataatatgaaagaaagtttgaaagtt 33332945  T
Q  142 tgaaattattgtgaaat 158  Q
    ||  |||||||||||||    
T  33332946 tgggattattgtgaaat 33332962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 2939193 - 2939070
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  2939193 ttgggggaattgatgaatgggtcagagatttgtgttttttagctaccatttattgatttcgttcttggttttgaataatatgaaagaaagtttgaaaatt 2939094  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    ||  |||||||| |||| ||||||    
T  2939093 tgggattattgttaaatgggtctg 2939070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 2938869 - 2938833
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  2938869 gagaggatttatgggttacttcatgatgatgatgatg 2938833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 33333163 - 33333199
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||| ||||||||||||||||||||||||||||||||    
T  33333163 gagaagatttatgggttacttcatgatgatgatgatg 33333199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 46015615 - 46015651
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||| ||||||    
T  46015615 gagaggatttatgggttacttcatgatgataatgatg 46015651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 19718280 - 19718157
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19718280 ttgggggaattgatgaaagggtttgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatt 19718181  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    ||  ||||||||||||| ||||||    
T  19718180 tgggattattgtgaaatgggtctg 19718157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 11039132 - 11039018
Alignment:
Q  44 gggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatttg 143  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11039132 gggggaattgatgaattggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagtttgaaaatttg 11039033  T
Q  144 aaattattgtgaaat 158  Q
      |||||||||||||    
T  11039032 ggattattgtgaaat 11039018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 11038878 - 11038842
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11038878 gagagggtttatgggttacttcatgatgatgatgatg 11038842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 12096412 - 12096448
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||| ||||||||||||||||||    
T  12096412 gagaggatttatgggttaattcatgatgatgatgatg 12096448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 13810084 - 13810208
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttt-taaaat 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||    
T  13810084 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttattggttttgaataatatgaaagaaagtttagaaaat 13810183  T
Q  141 ttgaaattattgtgaaataggtctg 165  Q
    |||  ||||||||||||| ||||||    
T  13810184 ttgggattattgtgaaatgggtctg 13810208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 7190569 - 7190460
Alignment:
Q  49 aattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatttgaaatt 148  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||  |||    
T  7190569 aattgatgaatgggtctaagatttgtgttttttagctaccatttattgattttattcttggttttgaataatatgaaagaaagtttgaaaatttgggatt 7190470  T
Q  149 attgtgaaat 158  Q
    ||||||||||    
T  7190469 attgtgaaat 7190460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 13810341 - 13810379
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatgtc 336  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13810341 gagaggatttatgggttacttcatgatgatgatgatgtc 13810379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 7190254 - 7190218
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  7190254 gagaggatttatgggttacttcatgatgatgatgatg 7190218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 45087648 - 45087525
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  45087648 ttggggaaattgatgaatgggtctgagatttttgttttttagctaccatttattaattttgttcttggttttgaataatatgaaagaaagtttaaaaatt 45087549  T
Q  142 tgaaattattgtgaaataggtctg 165  Q
    ||  ||||||||||||| ||||||    
T  45087548 tgggattattgtgaaatgggtctg 45087525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 45087369 - 45087334
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgat 333  Q
    ||||||||||||||||||||||||||||||||||||    
T  45087369 gagaggatttatgggttacttcatgatgatgatgat 45087334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 71273 - 71388
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatt 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||    
T  71273 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttatttattttgttcttggttttgaatagtatgaaagaaagttgaaaaatt 71372  T
Q  142 tgaaattattgtgaaa 157  Q
    |   ||||||||||||    
T  71373 taggattattgtgaaa 71388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 71587 - 71623
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  71587 gagaggatttatgggttacttcatgatgatgatgatg 71623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 269754 - 269869
Alignment:
Q  50 attgatgaatgggtctgagatttgtgttttttagctaccatttattcattttgttcttggttttgaataatatgaaagaaagttttaaaatttgaaatta 149  Q
    |||||| ||||||| ||| |||||||||||| ||||||| |||||  |||||| ||||| ||||||||| ||||||||||||||| ||||||||   |||    
T  269754 attgataaatgggtttgaaatttgtgtttttaagctaccctttatcgattttggtcttgattttgaatactatgaaagaaagtttgaaaatttggggtta 269853  T
Q  150 ttgtgaaataggtctg 165  Q
    ||||||| | ||||||    
T  269854 ttgtgaagtgggtctg 269869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 20488854 - 20488906
Alignment:
Q  42 ttgggggaattgatgaatgggtctgagatttgtgttttttagctaccatttat 94  Q
    |||||||||||||||||| ||||||||||||||||||||||| || |||||||    
T  20488854 ttgggggaattgatgaatcggtctgagatttgtgttttttagttatcatttat 20488906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 39992251 - 39992289
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatgatgtc 336  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  39992251 gagaggatttatgggttacttcatgatgacgatgatgtc 39992289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 91008 - 91041
Alignment:
Q  298 gagaggatttatgggttacttcatgatgatgatg 331  Q
    |||| |||||||||||||||||||||||||||||    
T  91008 gagaagatttatgggttacttcatgatgatgatg 91041  T

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