View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3312_high_6 (Length: 203)

Name: NF3312_high_6
Description: NF3312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3312_high_6
NF3312_high_6
[»] chr8 (23 HSPs)
chr8 (18-157)||(12124173-12124312)
chr8 (156-203)||(34897088-34897135)
chr8 (156-200)||(12606838-12606882)
chr8 (156-203)||(24362211-24362258)
chr8 (156-203)||(39954288-39954335)
chr8 (157-203)||(4611537-4611583)
chr8 (160-200)||(3025557-3025597)
chr8 (156-200)||(13844605-13844649)
chr8 (159-199)||(14134706-14134746)
chr8 (98-146)||(14692706-14692754)
chr8 (156-200)||(14731718-14731762)
chr8 (156-200)||(31236586-31236630)
chr8 (157-200)||(12559116-12559159)
chr8 (168-203)||(18067955-18067990)
chr8 (156-198)||(4786347-4786389)
chr8 (156-198)||(11803267-11803309)
chr8 (156-198)||(11927095-11927137)
chr8 (161-203)||(37283824-37283866)
chr8 (159-199)||(7658470-7658510)
chr8 (159-199)||(13203648-13203688)
chr8 (159-203)||(14634153-14634197)
chr8 (171-203)||(18069155-18069187)
chr8 (156-200)||(27213553-27213597)
[»] chr6 (31 HSPs)
chr6 (156-203)||(7265602-7265649)
chr6 (156-203)||(19040355-19040402)
chr6 (158-200)||(7996389-7996431)
chr6 (158-200)||(8022370-8022412)
chr6 (156-200)||(9025503-9025547)
chr6 (156-203)||(30866153-30866200)
chr6 (156-201)||(24832593-24832638)
chr6 (156-200)||(7086801-7086845)
chr6 (159-203)||(9658882-9658926)
chr6 (156-196)||(13364714-13364754)
chr6 (156-200)||(21924944-21924988)
chr6 (156-200)||(26562695-26562739)
chr6 (156-203)||(1532243-1532290)
chr6 (156-203)||(7377982-7378029)
chr6 (157-200)||(7723260-7723303)
chr6 (160-199)||(8389485-8389524)
chr6 (156-203)||(9027181-9027228)
chr6 (156-203)||(9617437-9617484)
chr6 (156-203)||(9629386-9629433)
chr6 (156-203)||(13851739-13851786)
chr6 (160-203)||(32511679-32511722)
chr6 (158-201)||(34073358-34073401)
chr6 (156-194)||(11591879-11591917)
chr6 (157-195)||(13360382-13360420)
chr6 (156-198)||(21142126-21142168)
chr6 (161-203)||(31579239-31579281)
chr6 (159-199)||(2040609-2040649)
chr6 (160-200)||(3398625-3398664)
chr6 (159-203)||(5462689-5462733)
chr6 (160-200)||(7938122-7938162)
chr6 (156-196)||(17411877-17411917)
[»] chr3 (25 HSPs)
chr3 (156-203)||(8039844-8039891)
chr3 (160-203)||(8383260-8383303)
chr3 (156-203)||(7928453-7928500)
chr3 (156-199)||(29508451-29508494)
chr3 (156-203)||(49505163-49505210)
chr3 (159-203)||(10690274-10690318)
chr3 (156-200)||(11313809-11313853)
chr3 (159-199)||(29112292-29112332)
chr3 (161-200)||(11251984-11252023)
chr3 (156-203)||(16192759-16192806)
chr3 (160-199)||(17005632-17005671)
chr3 (168-203)||(23870580-23870615)
chr3 (156-203)||(32804549-32804596)
chr3 (160-203)||(34307793-34307836)
chr3 (158-200)||(9624647-9624689)
chr3 (157-199)||(12704014-12704056)
chr3 (158-199)||(11493372-11493413)
chr3 (160-201)||(32429393-32429434)
chr3 (157-201)||(1438809-1438853)
chr3 (155-203)||(4466608-4466656)
chr3 (156-196)||(8789559-8789599)
chr3 (156-200)||(10455796-10455840)
chr3 (162-198)||(15796309-15796345)
chr3 (158-202)||(15812832-15812876)
chr3 (160-200)||(25948900-25948940)
[»] chr2 (22 HSPs)
chr2 (156-203)||(21616765-21616812)
chr2 (156-203)||(34691814-34691861)
chr2 (156-203)||(34714226-34714273)
chr2 (156-203)||(23718029-23718076)
chr2 (156-203)||(24105701-24105748)
chr2 (156-203)||(37411253-37411300)
chr2 (156-203)||(44860323-44860370)
chr2 (157-203)||(28677912-28677958)
chr2 (156-198)||(30527604-30527646)
chr2 (158-203)||(24975336-24975381)
chr2 (163-203)||(22084848-22084888)
chr2 (156-199)||(5367199-5367242)
chr2 (156-203)||(18276524-18276571)
chr2 (161-200)||(21782832-21782871)
chr2 (156-203)||(31808080-31808127)
chr2 (156-203)||(39279678-39279725)
chr2 (169-203)||(1327981-1328015)
chr2 (156-202)||(18889600-18889646)
chr2 (156-198)||(35449521-35449563)
chr2 (162-199)||(12940950-12940987)
chr2 (171-200)||(27084268-27084297)
chr2 (160-200)||(18420447-18420487)
[»] chr1 (35 HSPs)
chr1 (156-203)||(38503323-38503370)
chr1 (156-201)||(11605944-11605989)
chr1 (151-203)||(25098559-25098611)
chr1 (156-203)||(6427353-6427400)
chr1 (156-199)||(7918220-7918263)
chr1 (160-203)||(36878464-36878507)
chr1 (157-200)||(40181877-40181920)
chr1 (156-198)||(1864889-1864931)
chr1 (156-202)||(44482234-44482280)
chr1 (159-200)||(16927197-16927238)
chr1 (155-196)||(19324572-19324613)
chr1 (156-200)||(12443469-12443513)
chr1 (156-196)||(25361896-25361936)
chr1 (160-203)||(398778-398821)
chr1 (168-203)||(2896142-2896177)
chr1 (168-203)||(9629921-9629956)
chr1 (156-203)||(9709823-9709870)
chr1 (156-199)||(10233260-10233303)
chr1 (156-203)||(17831540-17831587)
chr1 (156-203)||(20157359-20157406)
chr1 (156-203)||(27471575-27471622)
chr1 (160-199)||(34298443-34298482)
chr1 (156-203)||(34371717-34371763)
chr1 (156-203)||(36906000-36906047)
chr1 (156-203)||(52903252-52903299)
chr1 (157-199)||(12707883-12707925)
chr1 (157-199)||(14332652-14332694)
chr1 (162-200)||(31015049-31015087)
chr1 (158-203)||(5898277-5898322)
chr1 (160-200)||(1486722-1486762)
chr1 (156-200)||(13436464-13436508)
chr1 (156-200)||(19562630-19562674)
chr1 (156-200)||(23738684-23738728)
chr1 (156-200)||(34712392-34712436)
chr1 (156-200)||(49872843-49872887)
[»] chr5 (25 HSPs)
chr5 (156-200)||(6471898-6471942)
chr5 (156-203)||(3966506-3966553)
chr5 (156-203)||(30502397-30502444)
chr5 (156-203)||(30542740-30542787)
chr5 (156-203)||(34879353-34879400)
chr5 (159-201)||(12927659-12927701)
chr5 (159-203)||(17593734-17593778)
chr5 (156-200)||(23012417-23012461)
chr5 (156-200)||(39205886-39205930)
chr5 (156-200)||(41091266-41091310)
chr5 (156-195)||(24273039-24273078)
chr5 (156-195)||(24389136-24389175)
chr5 (156-203)||(27144466-27144513)
chr5 (160-203)||(28588687-28588730)
chr5 (156-203)||(32630744-32630791)
chr5 (155-198)||(33035809-33035852)
chr5 (156-203)||(36838546-36838593)
chr5 (160-198)||(25863212-25863250)
chr5 (157-203)||(26312772-26312818)
chr5 (159-196)||(10022642-10022679)
chr5 (162-203)||(27932238-27932279)
chr5 (158-199)||(35017044-35017085)
chr5 (159-203)||(6035486-6035529)
chr5 (156-200)||(16203804-16203848)
chr5 (156-196)||(18421850-18421890)
[»] scaffold0123 (1 HSPs)
scaffold0123 (156-203)||(44534-44581)
[»] scaffold0022 (1 HSPs)
scaffold0022 (159-198)||(90851-90890)
[»] chr7 (29 HSPs)
chr7 (156-203)||(5548679-5548726)
chr7 (156-203)||(17851434-17851481)
chr7 (156-203)||(20549794-20549841)
chr7 (156-203)||(32308123-32308170)
chr7 (161-203)||(29787383-29787425)
chr7 (161-201)||(2424619-2424659)
chr7 (156-203)||(3520351-3520398)
chr7 (161-200)||(12289120-12289159)
chr7 (155-198)||(16341504-16341547)
chr7 (156-203)||(19206053-19206100)
chr7 (156-199)||(22868049-22868092)
chr7 (156-203)||(32287472-32287519)
chr7 (156-198)||(8239059-8239101)
chr7 (161-203)||(14729704-14729746)
chr7 (156-198)||(23128670-23128712)
chr7 (157-203)||(23191899-23191945)
chr7 (160-201)||(1401030-1401071)
chr7 (156-201)||(9482939-9482984)
chr7 (161-198)||(11890933-11890970)
chr7 (162-199)||(13300417-13300454)
chr7 (156-193)||(22602719-22602756)
chr7 (158-203)||(27093424-27093469)
chr7 (158-203)||(27184832-27184877)
chr7 (156-200)||(3721099-3721143)
chr7 (159-203)||(5235989-5236033)
chr7 (156-200)||(7328700-7328744)
chr7 (158-198)||(10377515-10377555)
chr7 (160-200)||(19992007-19992047)
chr7 (163-203)||(30731040-30731080)
[»] chr4 (31 HSPs)
chr4 (156-203)||(3712518-3712565)
chr4 (160-203)||(8423731-8423774)
chr4 (156-203)||(22440609-22440656)
chr4 (156-199)||(36635331-36635374)
chr4 (156-203)||(40613453-40613500)
chr4 (161-200)||(56257939-56257978)
chr4 (157-203)||(903925-903971)
chr4 (161-203)||(16184820-16184862)
chr4 (156-201)||(999357-999402)
chr4 (159-199)||(37698719-37698759)
chr4 (157-192)||(8402752-8402787)
chr4 (156-203)||(16189712-16189759)
chr4 (157-200)||(35952627-35952670)
chr4 (156-203)||(56488519-56488566)
chr4 (156-198)||(5775367-5775409)
chr4 (157-203)||(6863156-6863202)
chr4 (157-203)||(39035938-39035983)
chr4 (156-198)||(40742599-40742641)
chr4 (157-190)||(7970535-7970568)
chr4 (157-197)||(9996849-9996889)
chr4 (155-203)||(13783284-13783332)
chr4 (156-200)||(15029771-15029815)
chr4 (156-200)||(15659769-15659813)
chr4 (156-196)||(18576046-18576086)
chr4 (161-197)||(21873385-21873421)
chr4 (161-197)||(21929246-21929282)
chr4 (156-200)||(26504308-26504352)
chr4 (159-203)||(30522927-30522971)
chr4 (171-203)||(34200295-34200327)
chr4 (156-203)||(35723393-35723441)
chr4 (163-203)||(38148741-38148781)
[»] scaffold0020 (1 HSPs)
scaffold0020 (156-200)||(135321-135365)
[»] scaffold0044 (1 HSPs)
scaffold0044 (160-203)||(53183-53226)
[»] scaffold0036 (1 HSPs)
scaffold0036 (156-199)||(9756-9799)
[»] scaffold0306 (1 HSPs)
scaffold0306 (162-199)||(13407-13444)
[»] scaffold0152 (1 HSPs)
scaffold0152 (162-199)||(21883-21920)
[»] scaffold0049 (1 HSPs)
scaffold0049 (162-203)||(63776-63817)
[»] scaffold0004 (1 HSPs)
scaffold0004 (162-203)||(92810-92851)
[»] scaffold0008 (1 HSPs)
scaffold0008 (160-200)||(263385-263425)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 12124312 - 12124173
Alignment:
Q  18 caccacccaacgtcaaggtaattcgaaaacacgtcatgaatatgatttctatgcatgtaatgtaagcatgctttttacaattagatagccttttattctt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124312 caccaccccacgtcaaggtaattcgaaaacacgtcatgaatatgatttttatgcatgtaatgtaagcatgctttttacaattagatagccttttattctt 12124213  T
Q  118 tagattagatccaaggtactattggttttctaatcttgca 157  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12124212 tagattagatccaaggtactattggttttctaattttgca 12124173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 34897135 - 34897088
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  34897135 cacatataattacactgaattatgtgattttctcaaattattagcggt 34897088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 12606838 - 12606882
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  12606838 cacatataattacattgaattatatgattttctcaaattattagc 12606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 24362211 - 24362258
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  24362211 cacatataattacactgaattatgtgattctctcaaattattagcggt 24362258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 39954288 - 39954335
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  39954288 cacatataattacactaaattatgtgattttctcaaattattagcggt 39954335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 4611583 - 4611537
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||||    
T  4611583 acatataattacactgaattatgttattttctcaaattattagcggt 4611537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 3025597 - 3025557
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  3025597 tataattacactgaattatgtgattttctcaaattattagc 3025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 13844605 - 13844649
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||    
T  13844605 cacatataattacactcaattatgtgattttctcaaattattagc 13844649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 14134746 - 14134706
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  14134746 atataattacactgaattatgtgattttctcaaattattag 14134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 14692754 - 14692706
Alignment:
Q  98 ttagatagccttttattctttagattagatccaaggtactattggtttt 146  Q
    ||||||||||||||||||||| ||||| ||| ||| |||||||||||||    
T  14692754 ttagatagccttttattctttcgattatatcgaagatactattggtttt 14692706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 14731762 - 14731718
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||    
T  14731762 cacatataattacactaaattatgtgattttctcaaattattagc 14731718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31236586 - 31236630
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| || |||||||| |||||||||||||||||||||    
T  31236586 cacatataattacattgaattatgtgattttctcaaattattagc 31236630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 12559116 - 12559159
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||    
T  12559116 acatatgattacactgaattatatcattttctcaaattattagc 12559159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 18067955 - 18067990
Alignment:
Q  168 cactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18067955 cactgaattatgtgattttctcaaattattagcggt 18067990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 4786347 - 4786389
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||    
T  4786347 cacatataattacactgaattatgtgattttcttaaattatta 4786389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 11803309 - 11803267
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||    
T  11803309 cacatataattacactgaattatgtgattttcttaaattatta 11803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 11927095 - 11927137
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||    
T  11927095 cacatataattacactgaattatgtgattttatcaaattatta 11927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 37283824 - 37283866
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  37283824 ataattacactgaattatgtgattttctcagattattagcggt 37283866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 7658510 - 7658470
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  7658510 atataattacactgaattatgtaattttctcaaattattag 7658470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 13203688 - 13203648
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||| ||||||||||| | ||||||||||||||||||    
T  13203688 atataattacactgaattatgtaattttctcaaattattag 13203648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 14634153 - 14634197
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||||| ||||||| ||||| ||||||||    
T  14634153 atataattacactgaattatataattttcttaaattgttagcggt 14634197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 18069155 - 18069187
Alignment:
Q  171 tgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||||||||||||||||    
T  18069155 tgaattatttgattttctcaaattattagcggt 18069187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 27213597 - 27213553
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| || |||||||| ||||||||| |||||||||||    
T  27213597 cacatataattacagtgaattatgtgattttctgaaattattagc 27213553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 7265602 - 7265649
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  7265602 cacatataattacactgaattatgtgattttctcaaattattagcggt 7265649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 19040402 - 19040355
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19040402 cacatataattacactgaattatgtgattttctcaaattattagcggt 19040355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 7996389 - 7996431
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  7996389 catataattacactgaattatatgattttctcaaattattagc 7996431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 8022412 - 8022370
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  8022412 catataattacactgaattatatgattttctcaaattattagc 8022370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 9025503 - 9025547
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  9025503 cacatataattacactgaattatgtgattttctcaaattattagc 9025547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 30866153 - 30866200
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||    
T  30866153 cacatataattacattgaattatgtgattttctcaaattattagcggt 30866200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 24832638 - 24832593
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||||    
T  24832638 cacatataattacactaaattataagattttctcaaattattagcg 24832593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 7086845 - 7086801
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||    
T  7086845 cacatataattacactaaattatgtgattttctcaaattattagc 7086801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 9658926 - 9658882
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||    
T  9658926 atataattacactgaattatgtgattttcttaaattattagcggt 9658882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 13364714 - 13364754
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattat 196  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  13364714 cacatatgattacactgaattatatgattttctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 21924944 - 21924988
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||    
T  21924944 cacatataattacactgaattatttgatattctcaaattattagc 21924988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 26562739 - 26562695
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||    
T  26562739 cacatataattacactgaattatgtgattttctcaaatttttagc 26562695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 1532290 - 1532243
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||||    
T  1532290 cacatataattacactgaattatgtaattttatcaaattattagcggt 1532243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 7378029 - 7377982
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||| ||||||||||||||| ||||||||    
T  7378029 cacatataattacattgaattatgtgattttctcaaatttttagcggt 7377982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 7723260 - 7723303
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||   |||||||||||||||||||||||||||||||    
T  7723260 acatataattatgctgaattatatgattttctcaaattattagc 7723303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 8389485 - 8389524
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  8389485 tataattacactgaattatatgattttcttaaattattag 8389524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 9027228 - 9027181
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||| ||||||| ||||| ||||||||||||||||||    
T  9027228 cacatataattacacggaattatgtgattatctcaaattattagcggt 9027181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 9617484 - 9617437
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||| ||||||||||||||||||| ||||    
T  9617484 cacatataattacattgaattatgtgattttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 9629433 - 9629386
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||| |||||||||||||||||| |||||    
T  9629433 cacatataattacattgaattatgtgattttctcaaattattggcggt 9629386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 13851786 - 13851739
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  13851786 cacatataattacactgaattacgttattttctcaaattattagcggt 13851739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 32511679 - 32511722
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  32511679 tataattacactgaattatgtgattttcttaaattattagcggt 32511722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 34073358 - 34073401
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||||| |||||||||||  |||||||||||||||||||||    
T  34073358 catataattacactgaattatgagattttctcaaattattagcg 34073401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 11591879 - 11591917
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaatt 194  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  11591879 cacatataattacactgaattatgtgattttctcaaatt 11591917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 13360382 - 13360420
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaatta 195  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  13360382 acatataattacactgaattatgtgattttctcaaatta 13360420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 21142168 - 21142126
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||| |  ||||||||||||||||||||||||||||||    
T  21142168 cacatataactagactgaattatatgattttctcaaattatta 21142126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 31579239 - 31579281
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||    
T  31579239 ataattacactgaattatgtgattttctcaaattattaacggt 31579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 2040609 - 2040649
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
T  2040609 atataattttactgaattacgtgattttctcaaattattag 2040649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 3398664 - 3398625
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  3398664 tataattacactgaattatatgatttt-tcaaattattagc 3398625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 5462733 - 5462689
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| || |||||||| ||||||||||||||||||| ||||    
T  5462733 atataattacaatgaattatgtgattttctcaaattattaacggt 5462689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 7938162 - 7938122
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| |||| |||||||||||||| |||||||||||||    
T  7938162 tataattacactaaattatatgattttttcaaattattagc 7938122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 17411877 - 17411917
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattat 196  Q
    |||||||||||  |||||||||||||||||||| |||||||    
T  17411877 cacatataattatactgaattatatgattttcttaaattat 17411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 8039844 - 8039891
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  8039844 cacatataattacactgaattatataattttctcaaattattagcggt 8039891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 8383303 - 8383260
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  8383303 tataattacactgaattatatgattttctcaaattattagcggt 8383260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 7928500 - 7928453
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  7928500 cacatataattacactgaattatgtgattttttcaaattattagcggt 7928453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 29508494 - 29508451
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  29508494 cacatataattacactgaattatatgattttttcaaattattag 29508451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 49505163 - 49505210
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  49505163 cacatataattacactaaattatgtgattttctcaaattattagcggt 49505210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 10690274 - 10690318
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||    
T  10690274 atataattacactgaattatgtgattttctcagattattagcggt 10690318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 11313809 - 11313853
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||    
T  11313809 cacatataattacactaaattatgtgattttctcaaattattagc 11313853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 29112292 - 29112332
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  29112292 atataattacactgaattatatgattttctcaaataattag 29112332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 11252023 - 11251984
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagc 11251984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 16192759 - 16192806
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| | ||||||||||||||||| ||||    
T  16192759 cacatataattacactgaattatgttattttctcaaattattaacggt 16192806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 17005632 - 17005671
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  17005632 tataattacactgaattatatgattttatcaaattattag 17005671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 23870580 - 23870615
Alignment:
Q  168 cactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23870580 cactgaattatatgattttttcaaattattagcggt 23870615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 32804549 - 32804596
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| |||| |||||| ||||||||||||||||||| ||||    
T  32804549 cacatataattacactaaattatgtgattttctcaaattattaacggt 32804596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 34307793 - 34307836
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||    
T  34307793 tataattacactgaaatatgtgattttctcaaattattagcggt 34307836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 9624689 - 9624647
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||| || |||||||| |||||||||||||||||||||    
T  9624689 catataattacattgaattatgtgattttctcaaattattagc 9624647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 12704056 - 12704014
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||||| ||||||||||| || |||||||||||||||||    
T  12704056 acatataattacactgaattatgtgcttttctcaaattattag 12704014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 11493372 - 11493413
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||    
T  11493372 catataattacactgaattatgtgattttctcacattattag 11493413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 32429393 - 32429434
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||    
T  32429393 tataattgcactgaattatgtgattttcttaaattattagcg 32429434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 1438853 - 1438809
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||||||  |||||||||| ||||||||||||||| ||||||    
T  1438853 acatataattatactgaattatgtgattttctcaaattgttagcg 1438809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 4466608 - 4466656
Alignment:
Q  155 gcacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||  | ||||||||||||||||||||| ||||||||| ||||    
T  4466608 gcacatatagctacactgaattatatgattttcttaaattattaccggt 4466656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 8789559 - 8789599
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattat 196  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  8789559 cacatataattacacggaattatgtgattttctcaaattat 8789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 10455840 - 10455796
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| | |||||||||||||||| |||||||||    
T  10455840 cacatataattacacttagttatatgattttctcatattattagc 10455796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 15796309 - 15796345
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattatta 198  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  15796309 taattacactgaattatatgattttttcaaattatta 15796345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 15812832 - 15812876
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagcgg 202  Q
    ||||||||| |||||| |||| |||||||||||||||||| ||||    
T  15812832 catataattacactgagttatgtgattttctcaaattatttgcgg 15812876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 25948900 - 25948940
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| ||||||||||| ||||||| |||||||||||||    
T  25948900 tataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 21616812 - 21616765
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21616812 cacatataattacactgaattatgtgattttctcaaattattagcggt 21616765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 34691814 - 34691861
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  34691814 cacatataattacactgaattatatgattttatcaaattattagcggt 34691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 34714226 - 34714273
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  34714226 cacatataattacactgaattatatgattttatcaaattattagcggt 34714273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 23718076 - 23718029
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  23718076 cacatataattacactgaattatgtgactttctcaaattattagcggt 23718029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 24105748 - 24105701
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  24105748 cacatataattacactgaattatgtgactttctcaaattattagcggt 24105701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 37411253 - 37411300
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  37411253 cacatataatcacactgaattatgtgattttctcaaattattagcggt 37411300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 44860370 - 44860323
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||    
T  44860370 cacatataattacactgaattatgcgattttctcaaattattagcggt 44860323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 28677958 - 28677912
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  28677958 acatataattacactgaattatgtgattttttcaaattattagcggt 28677912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 30527604 - 30527646
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  30527604 cacatataattacactaaattatatgattttctcaaattatta 30527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 24975336 - 24975381
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||| || |||||||||||| |||||||||||||||||||||||    
T  24975336 catatatttacactgaattatacgattttctcaaattattagcggt 24975381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 22084848 - 22084888
Alignment:
Q  163 aatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  22084848 aattacactgaattatatgattttctcaaattattaacggt 22084888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 5367242 - 5367199
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||    
T  5367242 cacatataattacactgaattatgtgatttcctcaaattattag 5367199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 18276571 - 18276524
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| |||||| ||||||||||  ||||||||||||||||||||||||    
T  18276571 cacacataattacactgaattaagtgattttctcaaattattagcggt 18276524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 21782832 - 21782871
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagc 21782871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 31808127 - 31808080
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||| | ||||||||||||||    
T  31808127 cacatataattacactgaattatgtgattttgttaaattattagcggt 31808080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 39279725 - 39279678
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  39279725 cacatataattacactgaattatttgattttctcatattattaacggt 39279678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 1328015 - 1327981
Alignment:
Q  169 actgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||||||||||||||||||    
T  1328015 actgaattttatgattttctcaaattattagcggt 1327981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 18889600 - 18889646
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcgg 202  Q
    ||||||| ||| ||||||||||| |||||||||||| ||||||||||    
T  18889600 cacatatgattacactgaattatgtgattttctcaatttattagcgg 18889646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 35449563 - 35449521
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| ||||||||| | |||||||||||||||||||    
T  35449563 cacatataattacactgaattctgtgattttctcaaattatta 35449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 12940950 - 12940987
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattag 199  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  12940950 taattacactgaattatatgattttttcaaattattag 12940987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 27084297 - 27084268
Alignment:
Q  171 tgaattatatgattttctcaaattattagc 200  Q
    ||||||||||||||||||||||||||||||    
T  27084297 tgaattatatgattttctcaaattattagc 27084268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 18420447 - 18420487
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| || |||||||| |||||||||||||||||||||    
T  18420447 tataattgcattgaattatgtgattttctcaaattattagc 18420487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 38503370 - 38503323
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  38503370 cacatataattacactgaaatatatgattttctcaaattattagcggt 38503323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 11605944 - 11605989
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  11605944 cacatgtaatttcactgaattatatgattttttcaaattattagcg 11605989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 25098559 - 25098611
Alignment:
Q  151 tcttgcacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  25098559 tcttacacatataattacactgaattatgtgattttctcaaattatcagcggt 25098611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 6427400 - 6427353
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||    
T  6427400 cacatataattacattgaattatgtgattttctcaaattattagcggt 6427353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 7918220 - 7918263
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  7918220 cacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 36878507 - 36878464
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  36878507 tataattacactgaattatgtgattttctcaaattattagcggt 36878464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 40181920 - 40181877
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  40181920 acatataattacactgaattatgtgattttctcaaattattagc 40181877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 1864889 - 1864931
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  1864889 cacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 44482280 - 44482234
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcgg 202  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  44482280 cacatataattacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 16927197 - 16927238
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  16927197 atataattacactgaattatatgattttttcaaattattagc 16927238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 19324613 - 19324572
Alignment:
Q  155 gcacatataatttcactgaattatatgattttctcaaattat 196  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  19324613 gcacatataattacactgaattatgtgattttctcaaattat 19324572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 12443469 - 12443513
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||    
T  12443469 cacatacaattacactgaattatgtgattttctcaaattattagc 12443513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 25361936 - 25361896
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattat 196  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  25361936 cacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 398778 - 398821
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggt 398821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 2896142 - 2896177
Alignment:
Q  168 cactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2896142 cactgaattatgtgattttctcaaattattagcggt 2896177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 9629921 - 9629956
Alignment:
Q  168 cactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9629921 cactgaattatatgattttatcaaattattagcggt 9629956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 9709870 - 9709823
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||  ||||||| ||||||||||||||||||||||||    
T  9709870 cacatataattacaacgaattatgtgattttctcaaattattagcggt 9709823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 10233303 - 10233260
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||    
T  10233303 cacatataattacactgaattatgtgattttctcaatttattag 10233260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 17831540 - 17831587
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||| |||||||| || ||||||||||||||||||||||||    
T  17831540 cacatatgattacactgaataatgtgattttctcaaattattagcggt 17831587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 20157359 - 20157406
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||| ||||||||||| ||||||||||| ||||||||||||    
T  20157359 cacatatgattacactgaattatgtgattttctcacattattagcggt 20157406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 27471575 - 27471622
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||| ||||| ||||||||||| || |||||||||||||||||||||    
T  27471575 cacatgtaattacactgaattatgtgcttttctcaaattattagcggt 27471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 34298482 - 34298443
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  34298482 tataattacactgaattatgtgattttctcaaattattag 34298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 34371763 - 34371717
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  34371763 cacatataattacactgaattatgtgattttctc-aattattagcggt 34371717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 36906047 - 36906000
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| | ||||||||| ||||||||||| ||||||||||||    
T  36906047 cacatataattactctgaattatgtgattttctcagattattagcggt 36906000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 52903299 - 52903252
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||||||||||| | ||||||||| ||||    
T  52903299 cacatataattacactgaattatatgattttattaaattattaacggt 52903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 12707883 - 12707925
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||||| |||| |||||||||||||||| ||||||||||    
T  12707883 acatataattgcactaaattatatgattttcttaaattattag 12707925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 14332652 - 14332694
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||||| |||| |||||| ||||||||||||||||||||    
T  14332652 acatataattacactaaattatgtgattttctcaaattattag 14332694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 31015087 - 31015049
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  31015087 taattacactgaattatgtgattttctcaaattattagc 31015049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 5898277 - 5898322
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||| ||||||||||| ||||||| ||| ||||||||||||    
T  5898277 catataattacactgaattatgtgattttttcagattattagcggt 5898322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 1486722 - 1486762
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| ||||||||||| ||||||| |||||||||||||    
T  1486722 tataattacactgaattatgtgattttttcaaattattagc 1486762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 13436508 - 13436464
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| |||||| || |||||||||||    
T  13436508 cacatataattacactgaattatgtgatttccttaaattattagc 13436464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 19562630 - 19562674
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||| |||  ||||||||||||||||||||    
T  19562630 cacatataattacactgaactatgagattttctcaaattattagc 19562674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 23738728 - 23738684
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||| ||||| ||||||||||| ||||||| |||||||||||||    
T  23738728 cacatttaattgcactgaattatgtgattttttcaaattattagc 23738684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 34712392 - 34712436
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| |||||| | |||||||||||||||||||    
T  34712392 cacatataattacactaaattatgttattttctcaaattattagc 34712436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 49872887 - 49872843
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||    
T  49872887 cacatataattacactgaattatatagttttctcaaatgattagc 49872843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 6471898 - 6471942
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  6471898 cacatataattacactgaattatgtgattttctcaaattattagc 6471942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 3966553 - 3966506
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  3966553 cacatataattacactgaattgtgtgattttctcaaattattagcggt 3966506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 30502397 - 30502444
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  30502397 cacatataattacactgaattaagtgattttctcaaattattagcggt 30502444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 30542740 - 30542787
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  30542740 cacatataattacactgaattaagtgattttctcaaattattagcggt 30542787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 34879400 - 34879353
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||||||    
T  34879400 cacatattattacactgaattatatgattttctcaaatttttagcggt 34879353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 12927701 - 12927659
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcg 201  Q
    |||||||| |||| |||||||||||||||||||||||||||||    
T  12927701 atataattacactaaattatatgattttctcaaattattagcg 12927659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 17593734 - 17593778
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||    
T  17593734 atataattacactgaattacgtgattttctcaaattattagcggt 17593778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 23012417 - 23012461
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| || | ||||||||||||||||||||||||||||    
T  23012417 cacatataattacattaaattatatgattttctcaaattattagc 23012461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 39205930 - 39205886
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||    
T  39205930 cacatataattacacctaattatatgattttctcaaattattagc 39205886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 41091266 - 41091310
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  41091266 cacatataattacactgaattatgtgattttctcaaatcattagc 41091310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 24273039 - 24273078
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaatta 195  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  24273039 cacatataattacactgaattatgtgattttctcaaatta 24273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 24389175 - 24389136
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaatta 195  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  24389175 cacatataattacactgaattatgtgattttctcaaatta 24389136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 27144513 - 27144466
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||||||    
T  27144513 cacatataattacactaaattatgtgatttcctcaaattattagcggt 27144466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 28588687 - 28588730
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  28588687 tataattacactgaattatgtgattttctcaaattattaccggt 28588730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 32630744 - 32630791
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||||| ||||||||||||||||| ||||    
T  32630744 cacatataattacattgaattatataattttctcaaattattatcggt 32630791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 33035809 - 33035852
Alignment:
Q  155 gcacatataatttcactgaattatatgattttctcaaattatta 198  Q
    |||||||||||| ||||||||||||||||||  |||||||||||    
T  33035809 gcacatataattacactgaattatatgatttattcaaattatta 33035852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 36838593 - 36838546
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| |||| |||||| | ||||||||||||||||||||||    
T  36838593 cacatataattacactaaattatgtaattttctcaaattattagcggt 36838546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 25863250 - 25863212
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  25863250 tataattacactgaattatatcattttctcaaattatta 25863212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 26312818 - 26312772
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||| ||||||||||  |||||||||||||||||| |||||    
T  26312818 acatataattacactgaattaattgattttctcaaattatttgcggt 26312772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 10022679 - 10022642
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattat 196  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  10022679 atataattacactgaattatatgattttatcaaattat 10022642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 27932279 - 27932238
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||| ||||||||||| | ||||||||||||||||||||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggt 27932238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 35017085 - 35017044
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||| |||| |||||| ||||||||||||||||||||    
T  35017085 catataattacactaaattatgtgattttctcaaattattag 35017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 6035529 - 6035486
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||    
T  6035529 atataattacactgaattatattattt-ctcaaattattagcggt 6035486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 16203804 - 16203848
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| ||||||  ||||||||||||||||||||    
T  16203804 cacatataattacactaaattatgagattttctcaaattattagc 16203848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 18421850 - 18421890
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattat 196  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  18421850 cacatataattacactggattatgtgattttctcaaattat 18421890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 44534 - 44581
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  44534 cacatataattacactgaattatgtgattttctcaaatttttagcggt 44581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 90890 - 90851
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattatta 198  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  90890 atataattacactgaattatatgattttctcaaattatta 90851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 5548726 - 5548679
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  5548726 cacatataattacactgaattatttgattttctcaaattatcagcggt 5548679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 17851481 - 17851434
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  17851481 cacatataattacactgaattatgtgattttctaaaattattagcggt 17851434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 20549841 - 20549794
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  20549841 cacatataattacactgaattacgtgattttctcaaattattagcggt 20549794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 32308170 - 32308123
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  32308170 cacatacaattacactgaattatgtgattttctcaaattattagcggt 32308123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 29787383 - 29787425
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  29787383 ataattacactgaattatgtgattttctcaaattattagcggt 29787425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 2424659 - 2424619
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagcg 201  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  2424659 ataattacactgaattatgtgattttctcaaattattagcg 2424619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 3520351 - 3520398
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || ||||||||||||||||||||||| |||| ||||    
T  3520351 cacatataattacattgaattatatgattttctcaaatgattatcggt 3520398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 12289159 - 12289120
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  12289159 ataattccactgaattatgtgattttctcaaattattagc 12289120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 16341547 - 16341504
Alignment:
Q  155 gcacatataatttcactgaattatatgattttctcaaattatta 198  Q
    |||||||||||| |||| |||||| |||||||||||||||||||    
T  16341547 gcacatataattacacttaattatgtgattttctcaaattatta 16341504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 19206100 - 19206053
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||||  | |||||||| ||||||||||||||||||||||||    
T  19206100 cacatataattataatgaattatgtgattttctcaaattattagcggt 19206053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 22868092 - 22868049
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  22868092 cacatataattacactgaattatgtgattttctcatattattag 22868049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 32287472 - 32287519
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| || ||||||||||| ||||||||||| ||||||||||||    
T  32287472 cacatatacttgcactgaattatgtgattttctcagattattagcggt 32287519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 8239059 - 8239101
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| |||||||||||| |||||||| |||||||||    
T  8239059 cacatataattacactgaattataagattttcttaaattatta 8239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 14729746 - 14729704
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  14729746 ataattacactgaattacgtgattttctcaaattattagcggt 14729704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 23128670 - 23128712
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||    
T  23128670 cacatatgattacactgaattatatggttttctcaaattatta 23128712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 23191945 - 23191899
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| ||||| ||||||| ||| ||||||||||||||||||||||||    
T  23191945 acatgtaattacactgaaatatgtgattttctcaaattattagcggt 23191899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 1401071 - 1401030
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||    
T  1401071 tataattacactgaattatgtgagtttctcaaattattagcg 1401030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 9482984 - 9482939
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||||||| ||||||||| | ||||||||||||||||| ||||    
T  9482984 cacatataattacactgaattgtgtgattttctcaaattatcagcg 9482939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 11890933 - 11890970
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattatta 198  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  11890933 ataattacactgaattatatgattttttcaaattatta 11890970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 13300454 - 13300417
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattag 199  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  13300454 taattacactgaattatatgattttttcaaattattag 13300417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 22602719 - 22602756
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaat 193  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  22602719 cacatataattacactgaattatgtgattttctcaaat 22602756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 27093424 - 27093469
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||| |||| |||||| ||||||||| ||||||||||||||    
T  27093424 catataattacactaaattatgtgattttcttaaattattagcggt 27093469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 27184877 - 27184832
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||| |||| |||||| ||||||||| ||||||||||||||    
T  27184877 catataattacactaaattatgtgattttcttaaattattagcggt 27184832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 3721143 - 3721099
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||||||||  ||| |||||| |||||||||||||||||||||    
T  3721143 cacatataattatactaaattatgtgattttctcaaattattagc 3721099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 5236033 - 5235989
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| |||| |||||||| ||||||| ||||||||||||||    
T  5236033 atataattacactaaattatataattttcttaaattattagcggt 5235989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 7328700 - 7328744
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| |||| |||||| | |||||||||||||||||||    
T  7328700 cacatataattacactaaattatgttattttctcaaattattagc 7328744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 10377555 - 10377515
Alignment:
Q  158 catataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  10377555 catataattacactgaattatatgattttcttatattatta 10377515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 19992047 - 19992007
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| ||||||| ||| |||||||||||||||||||||    
T  19992047 tataattacactgaaatatgtgattttctcaaattattagc 19992007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 30731080 - 30731040
Alignment:
Q  163 aatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  30731080 aattacactgaattatgtgattttctcaaattattcgcggt 30731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 3712518 - 3712565
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||    
T  3712518 cacatataattacattgaattacatgattttctcaaattattagcggt 3712565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 8423731 - 8423774
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  8423731 tataattacactgaattatgtgattttctcaaattattagcggt 8423774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 22440609 - 22440656
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  22440609 cacatataattacactgaattatgtgattttctcaaattattaacggt 22440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 36635374 - 36635331
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  36635374 cacatataattacactgaattatgtgattttctcaaattattag 36635331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 40613500 - 40613453
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  40613500 cacatataattacactgaattatgtgattttctcaaaatattagcggt 40613453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 56257978 - 56257939
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  56257978 ataattacactgaattatatgattttctcaaattattagc 56257939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 903971 - 903925
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  903971 acatataattacactgaattatgtgattttctcaaattattaacggt 903925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 16184862 - 16184820
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  16184862 ataatttcactgaattgtgtgattttctcaaattattagcggt 16184820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 999357 - 999402
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcg 201  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||    
T  999357 cacatataattacactaaattatatgatttactcaaattattagcg 999402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 37698759 - 37698719
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattag 199  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  37698759 atataattacactgaattatataattttctcaaattattag 37698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 8402752 - 8402787
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaa 192  Q
    |||||||||| |||||||||||||||||||||||||    
T  8402752 acatataattacactgaattatatgattttctcaaa 8402787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 16189759 - 16189712
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  16189759 cacacataattacactgaattatgtgattttctcaaatttttagcggt 16189712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 35952627 - 35952670
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagc 200  Q
    |||||||||| || |||||||||||||||| |||||||||||||    
T  35952627 acatataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 56488519 - 56488566
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||| | ||||||||||||||||||||||||| ||||||||    
T  56488519 cacatatgattaccctgaattatatgattttctcaaattgttagcggt 56488566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 5775367 - 5775409
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  5775367 cacatataattacacttaattatgtgattttctcaaattatta 5775409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 6863202 - 6863156
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  6863202 acatataattgcaccgaattatatgattttttcaaattattaacggt 6863156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 39035938 - 39035983
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  39035938 acatataatttcactgaattatgtga-tttctcaaattattaacggt 39035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 40742641 - 40742599
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattatta 198  Q
    ||||||||||| ||||  |||||||||||||||||||||||||    
T  40742641 cacatataattacactagattatatgattttctcaaattatta 40742599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 7970568 - 7970535
Alignment:
Q  157 acatataatttcactgaattatatgattttctca 190  Q
    |||||||||| |||||||||||||||||||||||    
T  7970568 acatataattacactgaattatatgattttctca 7970535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 9996889 - 9996849
Alignment:
Q  157 acatataatttcactgaattatatgattttctcaaattatt 197  Q
    ||||||||||  |||||||||| ||||||||||||||||||    
T  9996889 acatataattatactgaattatgtgattttctcaaattatt 9996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 13783332 - 13783284
Alignment:
Q  155 gcacatataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||||||||||| ||||||||| | |||| ||||||||| |||||||||    
T  13783332 gcacatataattacactgaattttgtgatcttctcaaataattagcggt 13783284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 15029815 - 15029771
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||||||| |||| || |||||||||||||    
T  15029815 cacatataattacactgaattatgtgatattttcaaattattagc 15029771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 15659769 - 15659813
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||||    
T  15659769 cacatataattacaccgaattatgagattttctcaaattattagc 15659813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 18576046 - 18576086
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattat 196  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  18576046 cacatataattacaccgaattatgtgattttctcaaattat 18576086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 21873385 - 21873421
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattatt 197  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  21873385 ataatttcactgaattatgtgattttatcaaattatt 21873421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 21929246 - 21929282
Alignment:
Q  161 ataatttcactgaattatatgattttctcaaattatt 197  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  21929246 ataatttcactgaattatgtgattttatcaaattatt 21929282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 26504308 - 26504352
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  26504308 cacatataattacactgaactatttgattttcttaaattattagc 26504352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 30522927 - 30522971
Alignment:
Q  159 atataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||| || ||||||||||| |||||||||||||| |||||||||    
T  30522927 atatagttacactgaattatgtgattttctcaaataattagcggt 30522971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 34200295 - 34200327
Alignment:
Q  171 tgaattatatgattttctcaaattattagcggt 203  Q
    |||||||| ||||||||||||||||||||||||    
T  34200295 tgaattatgtgattttctcaaattattagcggt 34200327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 35723393 - 35723441
Alignment:
Q  156 cacatataatttcactgaattatatg-attttctcaaattattagcggt 203  Q
    ||||||||||| || |||||||| || ||||||||||||||||||||||    
T  35723393 cacatataattacattgaattatgtgtattttctcaaattattagcggt 35723441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 38148741 - 38148781
Alignment:
Q  163 aatttcactgaattatatgattttctcaaattattagcggt 203  Q
    |||| ||||||||||| ||||||||||||| ||||||||||    
T  38148741 aattacactgaattatgtgattttctcaaactattagcggt 38148781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 135321 - 135365
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||    
T  135321 cacatataattacacagaattatgtgattttctcaaattattagc 135365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 53226 - 53183
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||||| ||||||||||| |||||||||||||||||| |||||    
T  53226 tataattacactgaattatgtgattttctcaaattattggcggt 53183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 9756 - 9799
Alignment:
Q  156 cacatataatttcactgaattatatgattttctcaaattattag 199  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||    
T  9756 cacatataattacactgaattaagtgattttctcaaattattag 9799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 13444 - 13407
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattag 199  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  13444 taattgcactgaattatgtgattttctcaaattattag 13407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 21883 - 21920
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattag 199  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  21883 taattgcactgaattatgtgattttctcaaattattag 21920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 63817 - 63776
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||| ||||||||||| | ||||||||||||||||||||||    
T  63817 taattgcactgaattatgtaattttctcaaattattagcggt 63776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 92851 - 92810
Alignment:
Q  162 taatttcactgaattatatgattttctcaaattattagcggt 203  Q
    ||||| ||||||||||| | ||||||||||||||||||||||    
T  92851 taattacactgaattatgtaattttctcaaattattagcggt 92810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 263385 - 263425
Alignment:
Q  160 tataatttcactgaattatatgattttctcaaattattagc 200  Q
    ||||||| ||||||||||| || ||||||||||||||||||    
T  263385 tataattacactgaattatgtggttttctcaaattattagc 263425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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