View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3312_low_2 (Length: 377)
Name: NF3312_low_2
Description: NF3312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3312_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 28593663 - 28593559
Alignment:
| Q |
4 |
cgttagactcaaccccgttggtgcaaggaatttt-aaaaacaaatatttaatatagatatttttcacttattcctaaaccttaaaataacaaagtataat |
102 |
Q |
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| T |
28593663 |
cgttagactcaaccccgttggtgcaaggaatttttaaaaacaaatatttaatatagatatttttcacttattcctaaaccttaaaataacaaagtataat |
28593564 |
T |
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| Q |
103 |
attga |
107 |
Q |
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||||| |
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| T |
28593563 |
attga |
28593559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 28588087 - 28587983
Alignment:
| Q |
4 |
cgttagactcaaccccgttggtgcaaggaatttt-aaaaacaaatatttaatatagatatttttcacttattcctaaaccttaaaataacaaagtataat |
102 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28588087 |
cgttggactcaaccccgttggtgcaaggaatttttaaaaacaaatattttttatagatatttttcacttattcctaaaccttaaaataacaaagtataat |
28587988 |
T |
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| Q |
103 |
attga |
107 |
Q |
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||||| |
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| T |
28587987 |
attga |
28587983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 28593253 - 28593200
Alignment:
| Q |
137 |
tataaatgcatggtgtaatcatgatcaaatttatcgagaactgatggactacca |
190 |
Q |
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| T |
28593253 |
tataaaagcatggtgtaatcatgatgaaatttatcgagaatcgatagactacca |
28593200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 28589868 - 28589834
Alignment:
| Q |
195 |
catctattttggataaagggattgactaccagtgg |
229 |
Q |
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| T |
28589868 |
catctattttgggtaaagggattgactaccagtgg |
28589834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 27990947 - 27991004
Alignment:
| Q |
50 |
ttaatatagatatttttcacttattcctaaaccttaaaataacaaagtataatattga |
107 |
Q |
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|||||||||| ||| || |||||||| |||||||| ||||| | |||||||||||||| |
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| T |
27990947 |
ttaatatagacattatttacttattcttaaaccttgaaatagccaagtataatattga |
27991004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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