View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3312_low_4 (Length: 310)

Name: NF3312_low_4
Description: NF3312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3312_low_4
NF3312_low_4
[»] chr2 (4 HSPs)
chr2 (20-306)||(28593646-28593931)
chr2 (198-306)||(28588070-28588178)
chr2 (168-301)||(13872812-13872944)
chr2 (168-301)||(14012937-14013069)
[»] chr8 (3 HSPs)
chr8 (166-300)||(9824687-9824821)
chr8 (167-212)||(16843896-16843941)
chr8 (191-284)||(27290193-27290286)
[»] chr6 (1 HSPs)
chr6 (168-302)||(31169311-31169444)
[»] chr4 (2 HSPs)
chr4 (166-232)||(4394453-4394519)
chr4 (166-232)||(29067684-29067750)
[»] chr1 (2 HSPs)
chr1 (183-232)||(10228976-10229025)
chr1 (166-235)||(28224305-28224374)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 28593931 - 28593646
Alignment:
Q  20 gcttaacaaatgataatattttggattcattagcacggaaacattttctatagagaattgatatttgtaccatcattgtgggataaccttatcattctct 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||| |||    
T  28593931 gcttaactaatgataatattttggattcattagcacggaaacattttctatagagaattgatatttgtgcaatcattgtgggacaaccttattattttct 28593832  T
Q  120 ctttgtatccgtaaaaaataatagaataaaaagagaacatcgtattcataaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgct 219  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  28593831 ctttttatctgtaaaaaataatagaataaaaagagaacatcgtattcataaaaattaagaacattaaacttgtaatgttatttgaggcatgtcgaacgct 28593732  T
Q  220 aaatatgagtatctctcctagtcaatatttgaacgttgattcattagattgtgagagtttaactcctttcgttagactcaaccccgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||    
T  28593731 aaatatgagtatctctcctagtcaatatttgaacgttgatt-ataagattgtgagaatttaactccttccgttagactcaaccccgt 28593646  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 28588178 - 28588070
Alignment:
Q  198 tatttgaggcatatcaaacgctaaatatgagtatctctcctagtcaatatttgaacgttgattcattagattgtgagagtttaactcctttcgttagact 297  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||    
T  28588178 tatttgaggcatgtcgaacgctaaatatgagtatctctcctaggcaatatttgagcgttgattcattagattgcgagagtttaactccttccgttggact 28588079  T
Q  298 caaccccgt 306  Q
    |||||||||    
T  28588078 caaccccgt 28588070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 13872812 - 13872944
Alignment:
Q  168 taaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatctctcctagtcaatatttgaacgttgattcattaga 267  Q
    |||||||||| |||| || | || |||| |||||||||| || ||| ||  |||||||||||||| || | | ||||||| | ||  ||||||| |||      
T  13872812 taaaaattaataacactatatgtataattttatttgaggaatctcagacattaaatatgagtatcacttccaatcaatatat-aatattgattcgttaag 13872910  T
Q  268 ttgtgagagtttaactcctttcgttagactcaac 301  Q
    |||||| |||||||||||||||||||||| ||||    
T  13872911 ttgtgaaagtttaactcctttcgttagacacaac 13872944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 14012937 - 14013069
Alignment:
Q  168 taaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatctctcctagtcaatatttgaacgttgattcattaga 267  Q
    |||||||||| |||| || | || |||| |||||||||| || ||| ||  |||||||||||||| || | | ||||||| | ||  ||||||| |||      
T  14012937 taaaaattaataacactatatgtataattttatttgaggaatctcagacattaaatatgagtatcacttccaatcaatatat-aatattgattcgttaag 14013035  T
Q  268 ttgtgagagtttaactcctttcgttagactcaac 301  Q
    |||||| |||||||||||||||||||||| ||||    
T  14013036 ttgtgaaagtttaactcctttcgttagacacaac 14013069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 300
Target Start/End: Original strand, 9824687 - 9824821
Alignment:
Q  166 cataaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatctctcctagtcaatatttgaacgttgattcatta 265  Q
    |||||||||||| |||  ||||  ||||||  ||||||||| || |||||| ||||||||  ||||| |||||||||||  ||| ||| ||||||| | |    
T  9824687 cataaaaattaaaaactataaatctgtaattatatttgaggtatgtcaaacactaaatataggtatcactcctagtcaaagtttaaacattgattcgtga 9824786  T
Q  266 gattgtgagagtttaactcctttcgttagactcaa 300  Q
    | |||||||||| ||||| |||  |||||||||||    
T  9824787 ggttgtgagagtataacttcttctgttagactcaa 9824821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 16843941 - 16843896
Alignment:
Q  167 ataaaaattaagaacattaaacgtgtaatgttatttgaggcatatc 212  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  16843941 ataaaaattaagaacattaaatgtgtaattttatttgaggcatatc 16843896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 27290286 - 27290193
Alignment:
Q  191 gtaatgttatttgaggcatatcaaacgctaaatatgagtatctctcctagtcaatatttgaacgttgattcattagattgtgagagtttaactc 284  Q
    ||||| ||||||||||||| ||| || |||||||| |||||| |||| ||| ||||||| ||  ||||||||| || | |||||| ||||||||    
T  27290286 gtaattttatttgaggcatgtcagacactaaatataagtatcactccaagtaaatatttaaatattgattcatcaggtggtgagaatttaactc 27290193  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 302
Target Start/End: Complemental strand, 31169444 - 31169311
Alignment:
Q  168 taaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatctctcctagtcaa-tatttgaacgttgattcattag 266  Q
    ||||||||||||||| |||| || |||| ||||||||||||| | | ||  ||||||||| |||   ||| | |||| ||||| ||  ||||||||| |     
T  31169444 taaaaattaagaacactaaatgtataattttatttgaggcatgtgacac--taaatatgaatattattcccaatcaaatattttaatattgattcatcaa 31169347  T
Q  267 attgtgagagtttaactcctttcgttagactcaacc 302  Q
    | || |||||||||||||||||||||||||||||||    
T  31169346 actgcgagagtttaactcctttcgttagactcaacc 31169311  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 4394519 - 4394453
Alignment:
Q  166 cataaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatc 232  Q
    |||||||||||||| ||||||| ||||||| || |||||| ||| | ||||  ||||||||||||||    
T  4394519 cataaaaattaagaccattaaatgtgtaattttgtttgagacatgttaaacattaaatatgagtatc 4394453  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 29067684 - 29067750
Alignment:
Q  166 cataaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatc 232  Q
    |||||||||||||||| ||||| ||||  | |||||||||| || |||||| |||||||||| ||||    
T  29067684 cataaaaattaagaactttaaatgtgtggttttatttgaggtatgtcaaacactaaatatgattatc 29067750  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 10228976 - 10229025
Alignment:
Q  183 ttaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatc 232  Q
    ||||| ||||||| ||||||||||||| | |||| |||||||||||||||    
T  10228976 ttaaatgtgtaattttatttgaggcatgtgaaacactaaatatgagtatc 10229025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 28224305 - 28224374
Alignment:
Q  166 cataaaaattaagaacattaaacgtgtaatgttatttgaggcatatcaaacgctaaatatgagtatctct 235  Q
    ||||||||||||| |  ||||| ||||||| ||||||||| ||| || ||| || |||||||||||||||    
T  28224305 cataaaaattaagtatcttaaatgtgtaattttatttgagacatgtcgaacactcaatatgagtatctct 28224374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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