View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3312_low_5 (Length: 279)
Name: NF3312_low_5
Description: NF3312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3312_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 4764893 - 4765145
Alignment:
| Q |
12 |
atgttctcctatgattcacgatttgatcaattgctatcatttatatcttaattcttagagataaaaggtgttgtatctgctttttccttcacactgaatt |
111 |
Q |
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| T |
4764893 |
atgttctcctatgactcacgatttgatcaattgctatcatttatatcttaattcttagagataaaaggtgttgtatctgctttttccttcacactgaatt |
4764992 |
T |
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| Q |
112 |
gagttgtcttgtttcttccttctaagtgccactatttatattttaacataaggtattaattatgggtttactcttcttcttgttttgagattgtcacggt |
211 |
Q |
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| T |
4764993 |
gagttgtcttgtttcttccttctaagtgccactatttatattttaacataaggtattaattatgggtttactcttcttcttgttttgagattgtcacggt |
4765092 |
T |
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| Q |
212 |
tgttatttgttgatcagaattcgaatcaagtattgtctcttgcgtagctctgt |
264 |
Q |
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| T |
4765093 |
tgttatttgttgatcagaattcgaatcaagtattgtctcttgcgtagctctgt |
4765145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 12072809 - 12072676
Alignment:
| Q |
106 |
tgaattgagttgtcttgtttcttccttctaagtgccactatttatat--tttaacataaggtattaattatgggtttactcttcttcttgttttgagatt |
203 |
Q |
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| T |
12072809 |
tgaattgagttttcttgtttcttccttccaagtgacactatatatatattttaacataaggtattaattatgggtt---tcctctacttattttgagatt |
12072713 |
T |
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| Q |
204 |
gtcacggttg-ttatttgttgatcagaattcgaatca |
239 |
Q |
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| T |
12072712 |
gtcacggttgtttatttcttgatcaaaattcgaatca |
12072676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 12065980 - 12065892
Alignment:
| Q |
148 |
tatattttaacataaggtattaattatgggtttactcttcttcttgttttgagattgtcacggttgttatttgttgatcagaattcgaatca |
239 |
Q |
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| T |
12065980 |
tatattttaacataaggtattaattatgggtttcctctacttatt---ttaagattgtcacggttgttatttgttgatcaaaattcgaatca |
12065892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 12066056 - 12066002
Alignment:
| Q |
92 |
tttttccttcacactgaattgagttgtcttgtttcttccttctaagtgccactat |
146 |
Q |
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| T |
12066056 |
ttttgccttcacgttgaattgagttttcttgtttcttccttccaagtgacactat |
12066002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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