View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3313_high_10 (Length: 310)
Name: NF3313_high_10
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 14946223 - 14945943
Alignment:
| Q |
18 |
ccgaccaagatttgaacattgattcgaggacgaagggtttggttaatgatttcgctgttaatcagggtttgttctttgagaagtttgttaatgcttttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946223 |
ccgaccaagatttgaacattgattcgaggacgaagggtttggttaatgatttcgctgttaatcagggtttgttctttgagaagtttgttaatgcttttat |
14946124 |
T |
|
| Q |
118 |
taaggtgagtcagttgaatgttttggttggaaatcaaggtgaaattcgtggtaaatgtaatgtggtaaatggtggtaagaaatctgttttgtctactttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946123 |
taaggtgagtcagttgaatgttttggttggaaatcaaggtgaaattcgtggtaaatgtaatgtggtaaatggtggtaagaaatctgttttgtctactttg |
14946024 |
T |
|
| Q |
218 |
gtggaagagggaatggacttggttgagcaattttaaatttgaggcatagtttgttaattatttgtgttgttcttctagtat |
298 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946023 |
gtggaagagggaatggacttgattgagcaattttaaatttgaggcatagtttgttaattatttgtgttgttcttctagtat |
14945943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 15050270 - 15050205
Alignment:
| Q |
101 |
tttgttaatgcttttattaaggtgagtcagttgaatgttttggttggaaatcaaggtgaaattcgt |
166 |
Q |
| |
|
|||| |||||||||| ||||||| ||||| ||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
15050270 |
tttgctaatgcttttgttaaggtaagtcaattggatgttttgaccggaaatcaaggagaaattcgt |
15050205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 24013262 - 24013326
Alignment:
| Q |
101 |
tttgttaatgcttttattaaggtgagtcagttgaatgttttggttggaaatcaaggtgaaattcg |
165 |
Q |
| |
|
|||| |||||||||| |||| || || || |||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
24013262 |
tttgctaatgcttttgttaaagttagccaattgagtgttttgattggaaatcaaggagaaattcg |
24013326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University