View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_high_16 (Length: 236)
Name: NF3313_high_16
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 18946231 - 18946041
Alignment:
| Q |
28 |
atttgtaaattaaatatgtataaaatacaactgcattgaccatgacatcgaaactgtcataggtgcgtcaaagaaagnnnnnnnnnnnntaaacaattgg |
127 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
18946231 |
atttgtaaattaaatatgtataaaatacaattgcattgaccatgacatcaaaactgtcataggtgcgtcaaagaaaaagaaaaaaaaa--aggcaattgg |
18946134 |
T |
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| Q |
128 |
attcatagaagttatgctaaaataatggatagaaagtcatannnnnnnagtgtgcaaatgcaaatatgcacctattatttcggacaagttttg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18946133 |
tttcatagaagttatgctaaaataatggatagaaagtcatatttttttagtgtgcaaatgcaaatatgcacctattatttcggacaagatttg |
18946041 |
T |
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