View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3313_high_2 (Length: 511)

Name: NF3313_high_2
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3313_high_2
NF3313_high_2
[»] chr6 (13 HSPs)
chr6 (197-495)||(176345-176643)
chr6 (290-400)||(1453677-1453787)
chr6 (290-400)||(1465369-1465479)
chr6 (196-249)||(1442096-1442149)
chr6 (189-240)||(370782-370833)
chr6 (187-234)||(24417489-24417536)
chr6 (290-363)||(1459403-1459476)
chr6 (190-251)||(7564737-7564798)
chr6 (451-487)||(7564537-7564573)
chr6 (451-486)||(370569-370604)
chr6 (185-234)||(1470926-1470975)
chr6 (185-234)||(9819832-9819881)
chr6 (190-234)||(9703889-9703933)
[»] chr3 (50 HSPs)
chr3 (18-245)||(2441871-2442098)
chr3 (185-247)||(2644352-2644414)
chr3 (185-247)||(2659142-2659204)
chr3 (186-247)||(4142124-4142185)
chr3 (185-234)||(13498223-13498272)
chr3 (186-242)||(2696727-2696783)
chr3 (186-242)||(4157939-4157995)
chr3 (185-234)||(754612-754661)
chr3 (185-234)||(2456248-2456297)
chr3 (186-247)||(3754600-3754661)
chr3 (185-234)||(7324434-7324483)
chr3 (185-234)||(7942484-7942533)
chr3 (185-234)||(9561988-9562037)
chr3 (186-234)||(1891067-1891115)
chr3 (185-233)||(2502147-2502195)
chr3 (186-234)||(9608347-9608395)
chr3 (187-234)||(2492083-2492130)
chr3 (187-234)||(2631358-2631405)
chr3 (186-241)||(7432050-7432105)
chr3 (188-234)||(2459277-2459323)
chr3 (185-247)||(2476633-2476695)
chr3 (185-247)||(7334229-7334291)
chr3 (185-234)||(771502-771551)
chr3 (185-234)||(7430539-7430588)
chr3 (187-232)||(7442982-7443027)
chr3 (185-234)||(9565832-9565881)
chr3 (183-240)||(12133094-12133151)
chr3 (185-234)||(37753348-37753397)
chr3 (185-234)||(43991959-43992008)
chr3 (187-239)||(768327-768379)
chr3 (186-242)||(803213-803269)
chr3 (186-242)||(989396-989452)
chr3 (186-240)||(956381-956435)
chr3 (20-86)||(12132943-12133009)
chr3 (20-86)||(13479442-13479508)
chr3 (188-233)||(997578-997623)
chr3 (188-233)||(1013968-1014013)
chr3 (185-234)||(1437995-1438043)
chr3 (30-71)||(2678541-2678582)
chr3 (22-71)||(3754460-3754509)
chr3 (22-71)||(4142279-4142328)
chr3 (189-234)||(9587188-9587233)
chr3 (198-234)||(746386-746422)
chr3 (186-254)||(792887-792955)
chr3 (186-234)||(968671-968719)
chr3 (186-242)||(1007461-1007517)
chr3 (186-242)||(1022489-1022545)
chr3 (186-242)||(1931149-1931205)
chr3 (195-247)||(2686302-2686354)
chr3 (187-239)||(9594622-9594674)
[»] chr7 (4 HSPs)
chr7 (20-240)||(1078157-1078371)
chr7 (190-239)||(3927063-3927112)
chr7 (32-87)||(24723212-24723267)
chr7 (186-234)||(1421172-1421220)
[»] chr5 (13 HSPs)
chr5 (186-247)||(11081813-11081874)
chr5 (186-242)||(23766857-23766913)
chr5 (186-242)||(23816705-23816761)
chr5 (185-234)||(20292994-20293043)
chr5 (179-215)||(2067074-2067110)
chr5 (186-242)||(23769641-23769697)
chr5 (186-242)||(23819489-23819545)
chr5 (28-82)||(1427824-1427878)
chr5 (185-234)||(20301442-20301491)
chr5 (185-234)||(20305855-20305904)
chr5 (185-234)||(20310259-20310308)
chr5 (17-71)||(2067212-2067266)
chr5 (186-247)||(23732167-23732228)
[»] chr2 (9 HSPs)
chr2 (186-239)||(7160752-7160805)
chr2 (196-240)||(6538844-6538888)
chr2 (186-239)||(7156190-7156243)
chr2 (186-234)||(36577366-36577414)
chr2 (189-239)||(7168688-7168738)
chr2 (186-231)||(7174379-7174424)
chr2 (186-239)||(11237693-11237746)
chr2 (186-231)||(33038160-33038205)
chr2 (187-231)||(33020314-33020358)
[»] scaffold0044 (1 HSPs)
scaffold0044 (190-234)||(89147-89191)
[»] scaffold0015 (1 HSPs)
scaffold0015 (186-234)||(32332-32380)
[»] chr4 (5 HSPs)
chr4 (190-245)||(20016177-20016232)
chr4 (186-245)||(20019764-20019823)
chr4 (196-247)||(55419792-55419843)
chr4 (20-86)||(20019896-20019962)
chr4 (189-242)||(22672122-22672175)
[»] chr1 (5 HSPs)
chr1 (190-240)||(51381452-51381502)
chr1 (186-227)||(23896147-23896188)
chr1 (186-234)||(24629214-24629262)
chr1 (186-234)||(51782799-51782847)
chr1 (186-234)||(51858606-51858654)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 197 - 495
Target Start/End: Original strand, 176345 - 176643
Alignment:
Q  197 tatgaaggagtatggaaataaagattcttggactaaatcgttcactcttccattcgccgaattcgttggtcttgatggcgtctgcattactcggctttat 296  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgttcactcttccatttgccgaattcgttggtcttgatggcgtctgcattactcggctttat 176444  T
Q  297 atttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcc 396  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176445 atttctgaggaggaccaccaagtgttcgtgtacttcatcaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcc 176544  T
Q  397 tcccatgtatttccttcaactcaaatatctatcttgagagttccttcaactgtgatgtctatgttgagagtctcatatcaccttgacctacttgctttg 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176545 tcccatgtatttccttcaactcaaatatctatcttgagagttccttcaactgtgatgtctatgttgagagtctcatatcaccttgacctacttgctttg 176643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 1453787 - 1453677
Alignment:
Q  290 gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt 389  Q
    |||||||||||| ||||||||   |||||||||| | ||||| ||  || |||||||||||||||||||||||| | || |  |||||| ||| ||||||    
T  1453787 gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagatt 1453688  T
Q  390 caaggcctccc 400  Q
    |||||||||||    
T  1453687 caaggcctccc 1453677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 1465479 - 1465369
Alignment:
Q  290 gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt 389  Q
    |||||||||||| ||||||||   |||||||||| | ||||| ||  || |||||||||||||||||||||||| | || |  |||||| ||| ||||||    
T  1465479 gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagatt 1465380  T
Q  390 caaggcctccc 400  Q
    |||||||||||    
T  1465379 caaggcctccc 1465369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 1442149 - 1442096
Alignment:
Q  196 ttatgaaggagtatggaaataaagattcttggactaaatcgttcactcttccat 249  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttcactgttccat 1442096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 370833 - 370782
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaatcgttca 240  Q
    |||||| |||||||| | |||||||||||||||||||||||||||| |||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttca 370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 24417536 - 24417489
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaat 24417489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 1459476 - 1459403
Alignment:
Q  290 gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaaga 363  Q
    |||||||||||||||||| ||  |||||||| || | || ||| | |||||| |||||||||||||||||||||    
T  1459476 gctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaaga 1459403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 7564798 - 7564737
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttccattc 251  Q
    ||||| |||||||||| |||||||| || |||||||||||||||| ||||| | ||||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttccattc 7564737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 7564573 - 7564537
Alignment:
Q  451 atgtctatgttgagagtctcatatcaccttgacctac 487  Q
    |||||||||||||||||||| ||||||||||||||||    
T  7564573 atgtctatgttgagagtctcgtatcaccttgacctac 7564537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 486
Target Start/End: Complemental strand, 370604 - 370569
Alignment:
Q  451 atgtctatgttgagagtctcatatcaccttgaccta 486  Q
    ||||||| ||||||||||||||||||||||||||||    
T  370604 atgtctacgttgagagtctcatatcaccttgaccta 370569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 1470975 - 1470926
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||| ||||| ||||||| || ||||||||||||||||||||| ||||||    
T  1470975 ggatatttgggttatgaaagattatggaaataaagattcttggtctaaat 1470926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 9819881 - 9819832
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||| ||||| |||||||||| |||||||||| ||| |||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaat 9819832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 9703933 - 9703889
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||| |||||||||| |||||||||| ||||| |||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaat 9703889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 2441871 - 2442098
Alignment:
Q  18 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaatgtgtgtaacttcttgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2441871 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctgggggggtaaatgtgtgtaacttcttgg 2441970  T
Q  118 ccttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggatgtttggattatgaaggagtatggaaataa 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2441971 ccttgtttgtgttgagggattgtttgtgcgtgacttatggtgatagtgattttgattcggttctgaaggatgtttggattatgaaggagtatggaaataa 2442070  T
Q  218 agattcttggactaaatcgttcactctt 245  Q
    ||||||||||||||||| ||||||||||    
T  2442071 agattcttggactaaattgttcactctt 2442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 2644414 - 2644352
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||| ||||    
T  2644414 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcc 2644352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 2659204 - 2659142
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||| || |||| ||||    
T  2659204 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcc 2659142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 4142185 - 4142124
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||| ||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 13498223 - 13498272
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  13498223 ggatgtttggattatgaaggaatatggaaataaagagtcttggactaaat 13498272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 2696783 - 2696727
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 4157995 - 4157939
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 754661 - 754612
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||    
T  754661 ggatgtttggattatgaaggagtatggagatcaagagtcttggactaaat 754612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 2456248 - 2456297
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||||    
T  2456248 ggatgtttgggttatgaaggaatatggaaataaagactcttggactaaat 2456297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 3754600 - 3754661
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattcc 3754661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 7324483 - 7324434
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  7324483 ggatgtttggattatgaaggactacggaaataaagagtcttggactaaat 7324434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 7942484 - 7942533
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||    
T  7942484 ggatgtttggattatgaaggagtatggtaataaagagtcttggattaaat 7942533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 9562037 - 9561988
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  9562037 ggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaat 9561988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 1891115 - 1891067
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaat 1891067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 2502147 - 2502195
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaa 233  Q
    ||||||||||||||||||||||||||||||||| || | ||||||||||    
T  2502147 ggatgtttggattatgaaggagtatggaaataaggagttttggactaaa 2502195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 9608395 - 9608347
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaat 9608347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 2492083 - 2492130
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaat 2492130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 2631358 - 2631405
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaat 2631405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 7432105 - 7432050
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcac 241  Q
    |||||||||| ||||||||| |||||||||||||| || |||||||||| ||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcac 7432050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 2459277 - 2459323
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaat 2459323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 2476633 - 2476695
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||||||||||||  | |||||||||||||| ||||||||||||| || |||| ||||    
T  2476633 ggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcc 2476695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 7334291 - 7334229
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    |||||||||||| |||||||| || ||||||||||| ||||||||||||| || |||| ||||    
T  7334291 ggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcc 7334229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 771551 - 771502
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||| |||||||||| |||||||||| ||| |||||||||||||    
T  771551 ggatgtttgggttatgaaggaatatggaaatacagactcttggactaaat 771502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 7430588 - 7430539
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||| |||||||||||||| | |||| ||||||||    
T  7430588 ggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaat 7430539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 7443027 - 7442982
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaa 232  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaa 7442982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 9565881 - 9565832
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||||||||| ||| || |||| |||||||||||||    
T  9565881 ggatgtttggattatgaaggagtacggagatcaagagtcttggactaaat 9565832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 12133094 - 12133151
Alignment:
Q  183 aaggatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttca 240  Q
    |||||||||||| |||||| |||||||||||||| ||| || |||||||||| |||||    
T  12133094 aaggatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttca 12133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 37753397 - 37753348
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||| |||| |||||||| ||||| |||||||||||||    
T  37753397 ggatgtttggattatggaggaatatggaaagaaagagtcttggactaaat 37753348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 43991959 - 43992008
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||| ||||    
T  43991959 ggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaat 43992008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 803269 - 803213
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||| ||||||| || |||||||||||||| ||||||||||| | |||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 989396 - 989452
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||| | ||||| ||||| ||||||||||| ||||||||||||| |||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcact 989452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 956381 - 956435
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttca 240  Q
    |||||||||||||||||||| |||||||| ||||| ||||||  ||||| |||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttca 956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 12132943 - 12133009
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 86  Q
    |||||| || |||||| |||||||||||||||  |||||||||| || |||||| |||| |||||||    
T  12132943 aagtcctcgttttattgtttcttttgatttgggaaaagagtcttttcgaaaggttttgcctcctgat 12133009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 13479442 - 13479508
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 86  Q
    |||||||||||| ||| ||||||||||||||  |||||| |||||| |||| || |||| |||||||    
T  13479442 aagtccacgcttcattgtttcttttgatttgcggaaagaatcttatgaaaaagttttgcctcctgat 13479508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 233  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 233  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 1437995 - 1438043
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  1437995 ggatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaat 1438043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 2678582 - 2678541
Alignment:
Q  30 tttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaag 2678541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 3754460 - 3754509
Alignment:
Q  22 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    |||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  3754460 gtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaag 3754509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 4142328 - 4142279
Alignment:
Q  22 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    ||||| |||||||| |||||||||||||||  || |||||||||||||||    
T  4142328 gtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaag 4142279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 9587233 - 9587188
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||| ||||||||||||||  ||||||| ||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaat 9587188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 746422 - 746386
Alignment:
Q  198 atgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||| |||| |||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaat 746386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 792955 - 792887
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttccattcgcc 254  Q
    |||||||||||||||||||||||||| ||  | || ||||||| |||||  |||||| |||| ||||||    
T  792955 gatgtttggattatgaaggagtatggtaaagaggaatcttggagtaaattattcactattcctttcgcc 792887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 968671 - 968719
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||| ||||||||||  ||||||||||||| || ||||||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggactaaat 968719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 1007461 - 1007517
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||| |||||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcact 1007517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 1022489 - 1022545
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||| |||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcact 1022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 1931205 - 1931149
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||| |||||| |||  ||||||||||||| || |||||||||| |||||||    
T  1931205 gatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcact 1931149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 2686354 - 2686302
Alignment:
Q  195 attatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||||| |||||||| ||||| ||||||| ||||| ||||||| ||||    
T  2686354 attatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattcc 2686302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 9594674 - 9594622
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    ||||||||||||||||  |||| |||||| |||| ||||||||||||| ||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttc 9594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 1078371 - 1078157
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaatgtgtgtaacttcttggcc 119  Q
    |||||| ||||||||| |||||||||||||||  ||||| |||||||||||||| |||| |||||||| |       || |||||||| ||||||| |||    
T  1078371 aagtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagcc 1078272  T
Q  120 ttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggatgtttggattatgaaggagtatggaaataaag 219  Q
    |||  ||||||||| ||||| |||||| || ||| | ||||   ||||    | ||   | | |||||||||||| ||||||||||||||||||||| ||    
T  1078271 ttgggtgtgttgagggattgcttgtgcctggcttctcgtga---tgatacctactc---tgtaaaggatgtttgggttatgaaggagtatggaaatagag 1078178  T
Q  220 attcttggactaaatcgttca 240  Q
    | || |||||||||| |||||    
T  1078177 agtcgtggactaaattgttca 1078157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||| ||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 24723212 - 24723267
Alignment:
Q  32 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgatt 87  Q
    |||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgatt 24723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 1421220 - 1421172
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaat 1421172  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 11081813 - 11081874
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattcc 11081874  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23766913 - 23766857
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23816761 - 23816705
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 20292994 - 20293043
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  20292994 ggatgtttggattatgaaggaatatggaattaaagagtcttggactaaat 20293043  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 2067110 - 2067074
Alignment:
Q  179 tatgaaggatgtttggattatgaaggagtatggaaat 215  Q
    |||||||||||||||||||||||||||||||||||||    
T  2067110 tatgaaggatgtttggattatgaaggagtatggaaat 2067074  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23769697 - 23769641
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    |||||||||||||||||||| ||||| |||||||  ||||||||||||| |||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23819545 - 23819489
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    |||||||||||||||||||| ||||| |||||||  ||||||||||||| |||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23819489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 1427878 - 1427824
Alignment:
Q  28 gctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcc 82  Q
    |||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||    
T  1427878 gctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttcc 1427824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 20301442 - 20301491
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||    
T  20301442 ggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaat 20301491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 20305855 - 20305904
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  20305855 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaat 20305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 20310259 - 20310308
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||| |||||||||||||| ||||||| |||||| |||||||||||||    
T  20310259 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaat 20310308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 2067266 - 2067212
Alignment:
Q  17 aagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    ||||| |||| |||||||| |||| | |||||||| |||||||||||||||||||    
T  2067266 aagaaatccaagctttattgtttcatatgatttggggaaagagtcttatcaaaag 2067212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 23732167 - 23732228
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    |||||||||||||||||||| ||||| |||||||  ||||||| ||||  ||||||| ||||    
T  23732167 gatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcc 23732228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7160805 - 7160752
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  196 ttatgaaggagtatggaaataaagattcttggactaaatcgttca 240  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7156243 - 7156190
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttc 7156190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 36577366 - 36577414
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaat 36577414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 7168738 - 7168688
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||| ||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 7174424 - 7174379
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggacta 231  Q
    ||||| ||| |||||||||| ||||||||| |||||||||||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggacta 7174379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 11237693 - 11237746
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttc 239  Q
    ||||||||| ||||| ||||||||||||||| |||  |||||||||||| ||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttc 11237746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 33038160 - 33038205
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggacta 231  Q
    |||||||||||||||||||| |||||||| ||| | ||||||||||    
T  33038160 gatgtttggattatgaaggaatatggaaacaaaaagtcttggacta 33038205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 33020314 - 33020358
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggacta 231  Q
    |||| |||||||||||||| |||||||||||| | ||||||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggacta 33020358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 89147 - 89191
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaat 89191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 32380 - 32332
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaat 32332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 20016232 - 20016177
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactctt 245  Q
    ||||||| |||||||| ||||||| | |||| ||||||||||||| ||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctt 20016177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 20019823 - 20019764
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcactctt 245  Q
    ||||||||| | |||||||| ||||||| | |||| ||||||||||||| ||||||||||    
T  20019823 gatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctt 20019764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 55419792 - 55419843
Alignment:
Q  196 ttatgaaggagtatggaaataaagattcttggactaaatcgttcactcttcc 247  Q
    |||||||||  |||||||||||||||||||||||||||| ||| ||| ||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgtttactattcc 55419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20019962 - 20019896
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 86  Q
    |||| ||| ||||||| |||||||||||||||||||||| | || || |||||| |||| |||||||    
T  20019962 aagtgcactctttattgtttcttttgatttggagaaagaattttgtcgaaaggttttgcctcctgat 20019896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 22672175 - 22672122
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaatcgttcact 242  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||| |||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcact 22672122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 51381502 - 51381452
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaatcgttca 240  Q
    ||||||||||||| || ||||||||| |||| ||||||||||||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttca 51381452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttgg 227  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 24629262 - 24629214
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaat 24629214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 51782799 - 51782847
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    |||||||||||||||||||| ||||||||| || | ||||||| |||||    
T  51782799 gatgtttggattatgaaggaatatggaaatgaacaatcttggaataaat 51782847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 51858606 - 51858654
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaat 234  Q
    ||||||||||| |||||||| |||||||||  ||| |||||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaat 51858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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