View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3313_high_6 (Length: 404)

Name: NF3313_high_6
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3313_high_6
NF3313_high_6
[»] chr1 (1 HSPs)
chr1 (85-404)||(29792402-29792721)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 85 - 404
Target Start/End: Original strand, 29792402 - 29792721
Alignment:
Q  85 cttgtctaacccttttgaacacggtttctctgtatcaggaaataaggtatcggcaacacactgtcgtagtttctgtctctttctagagaagatgtctcca 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29792402 cttgtctaacccttttgaacacggtttctctgtatcaggaaataaggtatcggcaacacactgtcgtagtttctgtctctttctagagaagatgtctcca 29792501  T
Q  185 tcctcatactggtttcctgaagtaccatgtagtaaattgtcttacactaactatatcaatacattctcaaatataatcattaaatgtgacgtcttcagct 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29792502 tcctcatactggtttcctgaagtaccatgtagtaaattgtcttacacaaactatatcaatacattctcaaatataatcattaaatgtgacgtcttcagct 29792601  T
Q  285 gcataaaacacattttccctaaaattatgaatttaacatgtgaagattaattaacaaatgagtggaccctgtcaaagattggcactaagctactgaagac 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29792602 gcataaaacacattttccctaaaattatgaatttaacatgtgaagattaattaacaaatgagtggaccctgtcaaagattggcactaaactactgaagac 29792701  T
Q  385 cgagtaatataaactatata 404  Q
    ||||||||||||||||||||    
T  29792702 cgagtaatataaactatata 29792721  T

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