View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3313_low_10 (Length: 320)

Name: NF3313_low_10
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3313_low_10
NF3313_low_10
[»] chr4 (2 HSPs)
chr4 (19-218)||(34035847-34036046)
chr4 (234-310)||(34035786-34035862)
[»] chr3 (2 HSPs)
chr3 (19-95)||(53059527-53059600)
chr3 (19-65)||(53068780-53068826)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 34036046 - 34035847
Alignment:
Q  19 ttgatcttgtctgctgtttttggaacaaactccctcaaaggatataccctcactactctatttgttttcaattcctctttttatccgactcatttaaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34036046 ttgatcttgtctgctgtttttggaacaaactccctcaaaggatataccctcactactctatttgttttcaattcctctttttatccgactcatttaaatt 34035947  T
Q  119 ttgaaattcattgtattttgccagcatacactctagaaaaacatacctcttattatttcacatccttttctagaagcaacaatatatacatccctaactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34035946 ttgaaattcattgtattttgccagcatacactctagaaaaacatacctcttattatttcacatccttttctagaagcaacaatatatacatccctaactt 34035847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 34035862 - 34035786
Alignment:
Q  234 tatacatccctaacttatcattggtaaactggttttgattattagttcgaatctcacttcaaaaaatatatattcat 310  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34035862 tatacatccctaacttatcattggtgaactggttttgattattagttcgaatctcacttcaaaaaatatatattcat 34035786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 53059600 - 53059527
Alignment:
Q  19 ttgatcttgtctgctgtttttggaacaaactccctcaaaggatataccctcactactctatttgttttcaattcctc 95  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| |   |||| ||||||||| |||||||||    
T  53059600 ttgatcttgtctgctgttttaggaacaaactccctcaaaggaaatacctt---tactttatttgtttgcaattcctc 53059527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 53068826 - 53068780
Alignment:
Q  19 ttgatcttgtctgctgtttttggaacaaactccctcaaaggatatac 65  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  53068826 ttgatcttgtctgctgttttaggaacaaactccctcaaaggatatac 53068780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University