View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_low_11 (Length: 317)
Name: NF3313_low_11
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 14536630 - 14536339
Alignment:
| Q |
11 |
cacagatggagacgataatttgttcgaacagtcgtcttttgattcgttggaaaagcttcatgagtttgagaaacgattccggcctctttccattcaagct |
110 |
Q |
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| T |
14536630 |
cacagatggagacgataatttgttcgaacagtcgtcttttgattcgttggaaaagcttcatgagtttgagaaacgattccggcctctttccattcaagct |
14536531 |
T |
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| Q |
111 |
caggatcacgagtgtcataagctcgttcacggtgttagggtttgcgcctcgctgcgtttcaactctgatgatctttgcttctatgatgctgttgttgata |
210 |
Q |
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| T |
14536530 |
caggatcacgagtgtcataagctcgttcacggtgttagggtttgcgcctcgctgcatttcaactctgatgatcttcgattctatgatgctgttgttgata |
14536431 |
T |
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| Q |
211 |
gggttcgttccatatcaaagctgttttgagattttttagggctttgaacgctgttttattgatacaatataaagatattttatgtattaagt |
302 |
Q |
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| T |
14536430 |
gggttcgttccatatcaaagctgttttgagattttttagggctttgaacgctgttttattgatacaatataaagatattttatgtattaagt |
14536339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 14520643 - 14520480
Alignment:
| Q |
52 |
attcgttggaaaagcttcatgagtttgagaaacgattccggcctctttccattcaagctcaggatcacgagtgtcataagctcgttcacggtgttagggt |
151 |
Q |
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| T |
14520643 |
attcgttggaagagttacatgagtttgagaaacgattccgaccagtttccgttcaagctcaggattacgagtgtcataaactcgttcacggtgttagggt |
14520544 |
T |
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| Q |
152 |
ttgcgcctcgctgcgtttcaactctgatgatctttgcttctatgatgctgttgttgatagggtt |
215 |
Q |
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| T |
14520543 |
ttgcgcctcggtgcgcttcaactctaatggccttcgcttctatgatgctgttgttgatacggtt |
14520480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 37334077 - 37334239
Alignment:
| Q |
57 |
ttggaaaagcttcatgagtttgagaaacgattccggcctctttccattcaagctcaggatcacgagtgtcataagctcgttcacggtgttagggtttgcg |
156 |
Q |
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|||||| ||||| ||| ||||||||||||||| | ||||||||| |||||| ||||||| | || |||| ||||| ||| | |||||||||||||||| |
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| T |
37334077 |
ttggaagagcttgttgaatttgagaaacgattcagacctctttccgttcaagttcaggattatgaatgtcggaagcttgttaagggtgttagggtttgcg |
37334176 |
T |
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| Q |
157 |
cctcgctgcgtttcaactctgatgatctttgcttctatgatgctgttgttgatagggttcgtt |
219 |
Q |
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| T |
37334177 |
cttcgctgcatttcacacctgatgatcttcgcttctatgatgctgttgttgatgcggttcgtt |
37334239 |
T |
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