View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_low_16 (Length: 249)
Name: NF3313_low_16
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 171271 - 171453
Alignment:
| Q |
59 |
tagtttctttatcagcgtcttggtcatatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtct |
158 |
Q |
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| T |
171271 |
tagtttatttatcagcgtcttggtcatatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtct |
171370 |
T |
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| Q |
159 |
gaaacacataaacatatcattcatgtgaccttctttatcatctctacttaagtggtatcctctatgttggttggtttcatctc |
241 |
Q |
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| T |
171371 |
gaaacacataaacatatcaatcatgtgaccttctttatcatctctacttaagcggtatcctctatgttggttggtttcatctc |
171453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 171066 - 171125
Alignment:
| Q |
1 |
catgttgcgaaccaagtcattcatacatctttcggttgtatagtcactgcttcacaaata |
60 |
Q |
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| T |
171066 |
catgttgcgaaccaagtcattcatacatctttcggttgtatagtcactgcttcacaaata |
171125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 10811500 - 10811577
Alignment:
| Q |
83 |
catatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtctga |
160 |
Q |
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| T |
10811500 |
catatactaactcttcaatttatctcaaacctccttcaaggtcgacaagtccatggtatgatacataacctcttctga |
10811577 |
T |
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