View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3313_low_17 (Length: 243)
Name: NF3313_low_17
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 36418890 - 36418965
Alignment:
| Q |
63 |
taagggagcatcctcctatcttccaaaagtaacatgcatttcttaattttgtctaacatccaattttccctctata |
138 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36418890 |
taagggagcatcctcctatcttcctaaagttacatgcatttcttaattttgtctaacatccaatttaccctctata |
36418965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 36422117 - 36422148
Alignment:
| Q |
210 |
agattatacttttatgttaaaaaataatttaa |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36422117 |
agattatacttttatgttaaaaaataatttaa |
36422148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 36409038 - 36409097
Alignment:
| Q |
63 |
taagggagcatcctcctatcttccaaaagtaacatgcatttcttaattttgtctaacatcc |
123 |
Q |
| |
|
||||||||||||||| | |||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
36409038 |
taagggagcatcctcat-tcttccttaagttacaaccatttcttaattttgtctaacatcc |
36409097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University