View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_low_2 (Length: 836)
Name: NF3313_low_2
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 270 - 821
Target Start/End: Complemental strand, 38999625 - 38999074
Alignment:
| Q |
270 |
gtgtcccaaagggtgcaggaattggataaattaatggttcaacattgatgaacagacatacaaggcaaaaacattgattagaatggattcattcaatcag |
369 |
Q |
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| T |
38999625 |
gtgtcccaaagggtgcaggaattggataatttaatggttcaacattgatgaacagacattcaaggcaaaaacattgattagaatggattcattcaatcag |
38999526 |
T |
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| Q |
370 |
agtcatcaaaacaacaactttaggtacaatccaaatttgaatagagctacccaattagatgatgaagatgaagcagagttcacaggtcttcttgatgtct |
469 |
Q |
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| T |
38999525 |
agtcatcaaaacaacaactttaggtacaatccaaatttgaatagagctacccaattagatgatgaagatgaagcagagttcacaggtcttcttgatgtct |
38999426 |
T |
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| Q |
470 |
atgttcatcatgctagaaacattcataacatttgcatctatgataatcaagatgtatatgctaaattctcccttacttacaaccctgatgaaactctttc |
569 |
Q |
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| T |
38999425 |
atgttcatcatgctagaaacattcataacatttgcatctatgataatcaagatgtatatgctaaattctcccttacttacaaccctgatgaaactctttc |
38999326 |
T |
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| Q |
570 |
tacaagaataatcaatggaggtggaaaaaatccaacattcaatgaaaacttgaggatgaagataactcaaatagatgctgttatgaaatgtgaaatttgg |
669 |
Q |
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| T |
38999325 |
tacaagaataatcaatggaggtggaaaaaatccaacattcaatgaaaacttgaggatgaagataactcaaatagatgctgttatgaaatgtgaaatttgg |
38999226 |
T |
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| Q |
670 |
atgtttagtagagcaagaattcacatggaggaccaacttttagggtttgctttggttccaatttcacaaattgttggaaaaggaaaagtaactcaagact |
769 |
Q |
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| T |
38999225 |
atgtttagtagagcaagaattcacatggaggatcaacttttagggtttgctttggttccaatttcacaaattgttggaaaaggaaaagtaactcaagact |
38999126 |
T |
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| Q |
770 |
atagcctttcttcaactgatctttttcattctccagctggaactgttcaatt |
821 |
Q |
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| T |
38999125 |
atagcctttcttcaactgatctttttcattctccagctggaactgttcaatt |
38999074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 38999964 - 38999786
Alignment:
| Q |
26 |
ttgcttgttcctcaattcatggattgatcaaacaaatgtcttcaatctacatgttaatctagtagtatacataatggattgatcgaacatcatgttatca |
125 |
Q |
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| T |
38999964 |
ttgcttgttcctcaattcatggattgatcaaacaaatgtcttcaacctacatgttaatctagtagtatacataatggattgatcgaacatcatgttatca |
38999865 |
T |
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| Q |
126 |
ttcattctactaggtgagaatactcttttcatgttcttaagtcctttacatattttctctctttccattgatttgtagc |
204 |
Q |
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| T |
38999864 |
ttcattctactaggtgagaatactcttttcatgttctttagtcctttacatattttctctctttccattgatttgtagc |
38999786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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