View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_low_20 (Length: 229)
Name: NF3313_low_20
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_20 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 38177202 - 38177376
Alignment:
| Q |
17 |
atcaacaagtgtttccatggcatatctatatgcggactttaccgtataaactccctgactattaaatttccatatgcgcttgtcctctctatctcgatgc |
116 |
Q |
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| T |
38177202 |
atcaacaagtgtttccatggcatatctatatgcggactttaccgtataaactccctgactattaaatttccatatgcgcttgtcctctctatctcgatgc |
38177301 |
T |
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| Q |
117 |
aacagcaccagtttggatatagccttcctatcttgttcattaaaaatggctgcaatcaaatcccaattccaattt |
191 |
Q |
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| T |
38177302 |
aacagcaccagtttggatatagccttcctatcttgttcattaaaaatggctgcaatcaaatcccaattccaattt |
38177376 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 18978146 - 18978213
Alignment:
| Q |
21 |
acaagtgtttccatggcatatctatatgcggactttaccgtataaactccctgactattaaatttcca |
88 |
Q |
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| T |
18978146 |
acaagtgtttccattgcatatctatatgccgaccttaccgtataatttccatgacgattaaacttcca |
18978213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 34211919 - 34211875
Alignment:
| Q |
21 |
acaagtgtttccatggcatatctatatgcggactttaccgtataa |
65 |
Q |
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| T |
34211919 |
acaagtgtttccattgcatatctatatgccgaccttaccgtataa |
34211875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 34211808 - 34211729
Alignment:
| Q |
132 |
gatatagccttcctatcttgttcattaaaaatggctgcaatcaaatcccaattccaattttctccactcatcaaatctgc |
211 |
Q |
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| T |
34211808 |
gatatcgctttcctatcatgatcattaaaaatccctgctatcatcccccaattccagctttctccactcatcaaatctgc |
34211729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 14384 - 14214
Alignment:
| Q |
17 |
atcaacaagtgtttccatggcatatctatatgcggactttaccgtataaactccctgactattaaatttccatatgcgcttgtcctctctatctcgatgc |
116 |
Q |
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| T |
14384 |
atcaacaagtgtttccatagcatacctataggccgattttactgtgtagtttccttgattattgaacttccagatgagcttatcatccctatctcggttc |
14285 |
T |
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| Q |
117 |
aacagcaccagtttggatatagccttcctatcttgttcattaaaaatggctgcaatcaaatcccaattcca |
187 |
Q |
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| T |
14284 |
agcagcaccaatttcgatatagcctctcgatcttgctcattgaaaattcctgcaatcagcttccaattcca |
14214 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 8619282 - 8619349
Alignment:
| Q |
21 |
acaagtgtttccatggcatatctatatgcggactttaccgtataaactccctgactattaaatttcca |
88 |
Q |
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| T |
8619282 |
acaagtgttttcattgcatatctatatgccgaccttaccgtataaatttcatgacgattaaacttcca |
8619349 |
T |
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