View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3313_low_4 (Length: 464)

Name: NF3313_low_4
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3313_low_4
NF3313_low_4
[»] chr4 (8 HSPs)
chr4 (9-448)||(46147738-46148156)
chr4 (13-198)||(36463788-36463973)
chr4 (50-196)||(45687619-45687765)
chr4 (78-197)||(52467785-52467904)
chr4 (53-157)||(24334553-24334657)
chr4 (53-157)||(3793592-3793697)
chr4 (13-85)||(24334473-24334543)
chr4 (13-61)||(52467741-52467789)
[»] chr3 (13 HSPs)
chr3 (13-196)||(9666854-9667037)
chr3 (53-197)||(29196858-29197002)
chr3 (13-196)||(44700878-44701062)
chr3 (50-196)||(28073999-28074145)
chr3 (53-160)||(25796280-25796387)
chr3 (50-195)||(31314120-31314260)
chr3 (57-156)||(47650074-47650174)
chr3 (61-144)||(3715496-3715579)
chr3 (24-85)||(47650000-47650060)
chr3 (13-85)||(3715597-3715667)
chr3 (149-197)||(5372821-5372869)
chr3 (120-162)||(24177026-24177068)
chr3 (24-84)||(29196787-29196847)
[»] chr2 (11 HSPs)
chr2 (13-197)||(33162815-33162999)
chr2 (50-197)||(36773146-36773294)
chr2 (53-157)||(34681824-34681928)
chr2 (53-158)||(31056546-31056652)
chr2 (53-157)||(42269872-42269977)
chr2 (13-85)||(31056464-31056536)
chr2 (13-85)||(42269790-42269862)
chr2 (50-131)||(11066956-11067037)
chr2 (13-74)||(8040486-8040546)
chr2 (16-85)||(34681938-34682006)
chr2 (154-196)||(11066907-11066949)
[»] chr8 (11 HSPs)
chr8 (50-196)||(5688849-5688995)
chr8 (17-194)||(18141421-18141598)
chr8 (13-157)||(9765387-9765530)
chr8 (50-194)||(40320686-40320830)
chr8 (51-197)||(8149937-8150082)
chr8 (53-147)||(6127725-6127820)
chr8 (54-157)||(26402719-26402823)
chr8 (13-85)||(6127643-6127715)
chr8 (137-196)||(30291216-30291275)
chr8 (13-82)||(26402837-26402905)
chr8 (13-76)||(30291311-30291374)
[»] chr6 (3 HSPs)
chr6 (53-196)||(3039361-3039505)
chr6 (57-160)||(21800909-21801012)
chr6 (144-204)||(4045005-4045065)
[»] chr7 (9 HSPs)
chr7 (53-194)||(24526344-24526486)
chr7 (78-197)||(12098250-12098369)
chr7 (66-180)||(22269351-22269464)
chr7 (13-156)||(29160224-29160365)
chr7 (116-196)||(41317954-41318034)
chr7 (68-196)||(8152947-8153080)
chr7 (13-70)||(24526283-24526340)
chr7 (9-73)||(22269478-22269542)
chr7 (50-115)||(41317870-41317935)
[»] chr1 (12 HSPs)
chr1 (50-197)||(28266011-28266158)
chr1 (50-196)||(776847-776991)
chr1 (68-196)||(50167608-50167737)
chr1 (54-197)||(47255992-47256134)
chr1 (68-196)||(50169630-50169759)
chr1 (53-157)||(47703428-47703532)
chr1 (50-160)||(40816325-40816435)
chr1 (121-196)||(8871591-8871666)
chr1 (122-196)||(45644824-45644898)
chr1 (13-64)||(19073349-19073400)
chr1 (13-64)||(19121239-19121290)
chr1 (110-162)||(30790856-30790908)
[»] chr5 (4 HSPs)
chr5 (20-157)||(10282178-10282316)
chr5 (9-197)||(28277694-28277881)
chr5 (53-157)||(3881233-3881338)
chr5 (113-162)||(16642578-16642627)
[»] scaffold0477 (2 HSPs)
scaffold0477 (53-147)||(5456-5552)
scaffold0477 (20-85)||(5562-5627)
[»] scaffold0148 (2 HSPs)
scaffold0148 (53-157)||(11231-11335)
scaffold0148 (24-85)||(11161-11221)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 448
Target Start/End: Original strand, 46147738 - 46148156
Alignment:
Q  9 acgttggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaa 108  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46147738 acgttggagcaggtgatagtacagtactataccttattcgtctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaa 46147837  T
Q  109 tctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaacaacaacaatttgt 208  Q
     ||||||||||||||||                |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46147838 cctgaaccattcaatcg----------------aaacgtgccatgatttttccaaacttcaacatcaattttgagacacatttcaacaacaacaatttgt 46147921  T
Q  209 gatatcaaagagaagaacatgcatggatggatctgaggccgtgtagcatccatcaattacaatacatcaccctagtatttagccaatcgttgagactcac 308  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46147922 gatatcaaagagaagaacatgc--ggatggatctgaggccgtgtagcatccatcaattacaatacatcaccctagtatttagccaatcgttgagactcac 46148019  T
Q  309 gctcgtcaatagcttctgaatcaggtagcttagcatgtctagccattaaatcacccactcggtgggtttcataaaagttacgacgaaaataagcatgcaa 408  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46148020 gctcgtcaatagcttctgaatcaggta---tagcatgtctagccattaaatcacccactcggtgggtttcataaaagttacgacgaaaataagcatgcaa 46148116  T
Q  409 attagcacatctggccaaatatttgggatagagttcttta 448  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  46148117 attagcacacctggccaaatatttgggatagagttcttta 46148156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 36463788 - 36463973
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctg 112  Q
    ||||||||||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| || |||||||||||||| || || ||| || ||| |||    
T  36463788 tggagcaggtgatagtacaatactataccttattcgtctgcttcgtgccacgttcctcctgcatcgtgccacgattttttcaatggcaacccaaaaactg 36463887  T
Q  113 aaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaacaac 198  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  36463888 aaccattcaatcgtgtcacgttgccctgcaaacgtgccacgattgttccaaacttcaatatcaattttgagacacatttcaacaac 36463973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 45687619 - 45687765
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    |||||||||| |||||||||||||||| ||||||||| |||||||||| ||| || ||| ||||||||||||||||| |||| ||||||||||||||| |    
T  45687619 ctgcatcgtgtcacgttcctcctggatcgtgccacgacttttccagtggcaacccaaaaactgaaccattcaatcgtaccacgttgccctgcaaacgtgc 45687718  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  45687719 cacgatttttccaaacttcaacatcaattttgagacacatttcaaca 45687765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 52467785 - 52467904
Alignment:
Q  78 gtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaat 177  Q
    ||||| |||||||| || || ||| || ||| |||||||||||||||||||||| ||||||||||||||| |||||||| ||  | |||||||||| |||    
T  52467785 gtgcctcgattttttcaatggcaacccaaaacctgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgattgttttagacttcaacatcaat 52467884  T
Q  178 tttgagacacatttcaacaa 197  Q
    ||||||||||||||||||||    
T  52467885 tttgagacacatttcaacaa 52467904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 24334553 - 24334657
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    ||||||||||||||||| |||||| ||||||| | |||||||  |||||| ||||||||||||||| |||||||| ||| ||||||||||||||| ||||    
T  24334553 catcgtgccacgttccttctggatcgtgccacaaattttccaacgacaaatccaaatctgaaccatccaatcgtgacacgttgccctgcaaacgtgccac 24334652  T
Q  153 gattt 157  Q
    |||||    
T  24334653 gattt 24334657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 3793697 - 3793592
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaa-atctgaaccattcaatcgtgccacattgccctgcaaacgtacca 151  Q
    |||||| ||| ||||||||||||| |||||||||||||||||| || |||||||| ||||||||||| ||||||| |||  || |||||||||||| |||    
T  3793697 catcgttccatgttcctcctggatcgtgccacgatttttccagcgaaaaacccaatatctgaaccatccaatcgtaccatgtttccctgcaaacgtgcca 3793598  T
Q  152 cgattt 157  Q
    ||||||    
T  3793597 cgattt 3793592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 24334473 - 24334543
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    |||||||||| |||||||| || ||||| ||||||| || |||||||||||||||||||||||| ||||||||    
T  24334473 tggagcaggt-atagtacattactataccttatccg-ctacatcgtgccacgttcctcctggatcgtgccacg 24334543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 52467741 - 52467789
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgcc 61  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  52467741 tggagcaggtgatagtacagtactataccttatctgtctgcatcgtgcc 52467789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 9666854 - 9667037
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctg 112  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||| |||    
T  9666854 tggagcaggtgatagtacaatattataccttatccgtctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactg 9666953  T
Q  113 aaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||| |||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  9666954 aacccttcaatcgtgccacgttgccctgcaaacgtgccacgattgttccaaacttcaacattaattttgagacacatttcaaca 9667037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 29196858 - 29197002
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||| || |||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  29196858 catcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaattgaaccattcaatcgtgccacgttgccctgcaaacgtgccac 29196957  T
Q  153 gatttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
    |||||| |||||||||||||| |||||||||||||||||||||||    
T  29196958 gattttcccaaacttcaacatcaattttgagacacatttcaacaa 29197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 44700878 - 44701062
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctg 112  Q
    |||| |||||||||||||| |||||||  ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||  || || ||| |||    
T  44700878 tggaacaggtgatagtacaatattatatcttatccgcctgcatcgtgctacgttcctcctggatcgtgccacgatttttccagtggtaacccaaaaactg 44700977  T
Q  113 aaccattcaatcgtgccacattgccctgcaaacgtaccac-gatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    ||||||||||||||||||| ||||||||||||||| |||| | |||||||| ||||||| || ||||||||||||||||||||||    
T  44700978 aaccattcaatcgtgccacgttgccctgcaaacgtgccacggttttttccagacttcaaaatcaattttgagacacatttcaaca 44701062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 28074145 - 28073999
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||| |||||||||||||||||||||| ||||||||||||||| |    
T  28074145 ctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgc 28074046  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    ||| ||||||| |||||||||||| ||||||||| ||  ||||||||    
T  28074045 cacaatttttctaaacttcaacatcaattttgagtcaattttcaaca 28073999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 25796280 - 25796387
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||| ||| |||||||||||| ||||||||||||||| ||||    
T  25796280 catcgtgccacgttcctcctggatcgtgtcacgatttttccagtgacaaaccaaaacctgaatcatccaatcgtgccacgttgccctgcaaacgtgccac 25796379  T
Q  153 gatttttc 160  Q
    ||||||||    
T  25796380 gatttttc 25796387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 31314260 - 31314120
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| | | || ||| |||||||||     |||| | |||| |||||||||||| |    
T  31314260 ctgcatcgtgccacgttcctcttggatcgtgccacgatttttccagtggcgacccaaaaactgaaccat-----cgtgtcgcattaccctgcaaacgtgc 31314166  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaac 195  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
T  31314165 cacgattttttcaaacttcaacatcaattttgagacacatttcaac 31314120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 47650074 - 47650174
Alignment:
Q  57 gtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaa-cgtaccacgat 155  Q
    |||||||||||||||||||| ||||||  |||||||||  |||||||||||||||||||||  |||||||||||| |||||||||||| ||| |||||||    
T  47650074 gtgccacgttcctcctggatcgtgccataatttttccaacgacaaacccaaatctgaaccaaccaatcgtgccacgttgccctgcaaatcgtgccacgat 47650173  T
Q  156 t 156  Q
    |    
T  47650174 t 47650174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 3715579 - 3715496
Alignment:
Q  61 cacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaa 144  Q
    |||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  3715579 cacgttcctcctggatcgtgccacaatttttccagcgacaaacacaaatctgaaccaaccaatcgtgccacgttgccctgcaaa 3715496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 47650000 - 47650060
Alignment:
Q  24 atagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||    
T  47650000 atagtacagtattataccttatccg-ctacatcgtgccacgttcctcctggatcgtgccacg 47650060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 3715667 - 3715597
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    |||||||||| ||||||||||| ||||| ||||||| || ||| |||||||||||||||||||| ||||||||    
T  3715667 tggagcaggt-atagtacagtactataccttatccg-ctacattgtgccacgttcctcctggatcgtgccacg 3715597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 5372869 - 5372821
Alignment:
Q  149 ccacgatttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
    ||||||||||| || | |||||||| |||||||||||||||||||||||    
T  5372869 ccacgattttttcagatttcaacatcaattttgagacacatttcaacaa 5372821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 24177068 - 24177026
Alignment:
Q  120 caatcgtgccacattgccctgcaaacgtaccacgatttttcca 162  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||    
T  24177068 caatcgtgccacgttgccctgcaaacgtgccacgatttctcca 24177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 29196787 - 29196847
Alignment:
Q  24 atagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccac 84  Q
    |||||||| || ||||| |||||||||  ||| |||||||||||||||| ||| |||||||    
T  29196787 atagtacaatactataccttatccgtccacattgtgccacgttcctcctagatcgtgccac 29196847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 33162815 - 33162999
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctg 112  Q
    |||||| |||||||||||| |  ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| || ||| |||    
T  33162815 tggagcgggtgatagtacaatgctataccttatccgtctgcatcgtgccatgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactg 33162914  T
Q  113 aaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
    ||||||||||||||||||| || |||| ||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  33162915 aaccattcaatcgtgccacgtttccctacaaacatgccacgatttttccaaacttcatcatcaattttgagacacatttcaacaa 33162999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 36773294 - 36773146
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||| ||| || ||| |||||||||||||||||||||| ||||||||||||| | |    
T  36773294 ctgcatcgtgtcacgttcctcctggatcgtgccacaatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacatgc 36773195  T
Q  150 cacgatttttccaaacttc-aacattaattttgagacacatttcaacaa 197  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  36773194 cacgattttttcaaacttcaaacatcaattttgagacacatttcaacaa 36773146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 34681928 - 34681824
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||    
T  34681928 catcgtgccacgttcctactggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 34681829  T
Q  153 gattt 157  Q
    |||||    
T  34681828 gattt 34681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 31056546 - 31056652
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaaccc-aaatctgaaccattcaatcgtgccacattgccctgcaaacgtacca 151  Q
    |||||||||| |||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||| || |||    
T  31056546 catcgtgccatgttccttctggatcgtgccatgatttttccagtgacaaacccaaaatctgaaccatccaattgtgccacgttgccctgcaaatgtgcca 31056645  T
Q  152 cgatttt 158  Q
    |||||||    
T  31056646 cgatttt 31056652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 42269872 - 42269977
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaac-ccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtacca 151  Q
    |||| |||||||||||||||||||  ||||||||||||||||| ||||||| | ||| ||||||||| |||||||||||| ||||||||||||||| |||    
T  42269872 catcatgccacgttcctcctggatcctgccacgatttttccagcgacaaacgcaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 42269971  T
Q  152 cgattt 157  Q
    ||||||    
T  42269972 cgattt 42269977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 31056464 - 31056536
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    |||||||||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||    
T  31056464 tggagcaggtcatagtacaatattataccttatctgtctgcatcgtgccatgttcctcctggatcgtgccacg 31056536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 42269790 - 42269862
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    ||||||||||||||||||| || ||||| ||||| |||| |||||||||||||||||||||||| ||| ||||    
T  42269790 tggagcaggtgatagtacaatactataccttatctgtctacatcgtgccacgttcctcctggatcgtgtcacg 42269862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 11067037 - 11066956
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccac 131  Q
    |||||||||  |||||||||||| ||| |||||||||||||| ||||| ||| || ||| ||||||| ||||||||||||||    
T  11067037 ctgcatcgtatcacgttcctcctagatcgtgccacgattttttcagtggcaacccaaaaactgaacccttcaatcgtgccac 11066956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 8040486 - 8040546
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctgg 74  Q
    |||||||||||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||    
T  8040486 tggagcaggtgatagtacagtactataccttatccg-ctacatcgtgtcacgttcctcctgg 8040546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 34682006 - 34681938
Alignment:
Q  16 agcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    |||||||||||||||| || ||||| ||||||| || |||||||||||||||||||||||| ||| ||||    
T  34682006 agcaggtgatagtacaatactataccttatccg-ctacatcgtgccacgttcctcctggatcgtgtcacg 34681938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 11066949 - 11066907
Alignment:
Q  154 atttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  11066949 atttttccaaacttcaacatcaattttgagacaaatttcaaca 11066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 5688995 - 5688849
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |  ||| |||||||||||||||||||||| ||||||||||||||| |    
T  5688995 ctgcatcgtgccacgttcctcctggatcgtgccacgattttttcagtgacaaccaaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgc 5688896  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5688895 cacgatttttccaaacttcaacatcaattttgagacacatttcaaca 5688849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 18141598 - 18141421
Alignment:
Q  17 gcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaacc 116  Q
    |||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||| || ||| |||||||    
T  18141598 gcagatgatagtacaatactataccttatccgtctgcatcgtgccacgttcctcctggatcgtgccataatttttccagtggcaacccaaaaactgaacc 18141499  T
Q  117 attcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaa 194  Q
     ||||||||||| || ||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||    
T  18141498 gttcaatcgtgcgacgttgccctgcaaacgtgccacgattgttccagacttcaacatcaattttgagacacatttcaa 18141421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 9765530 - 9765387
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctg 112  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||    
T  9765530 tggagcaggtgatagtacagtactataccttatctgtctgcatcgtgccacgttcctcctggatcgtgccatgatttttcc-gtgacaaacccaaatatg 9765432  T
Q  113 aaccattcaatcgtgccacattgccctgcaaacgtaccacgattt 157  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||    
T  9765431 aaccatccaatcgtgccacgttgccctgcaaacgtgccacgattt 9765387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 40320830 - 40320686
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||| ||||||||||||| | |    
T  40320830 ctgcatcgtgccacgttcctcctacattgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacatgc 40320731  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaa 194  Q
    |||||||||||||||||||||| | |||||| |||||||||||||    
T  40320730 cacgatttttccaaacttcaacttcaattttaagacacatttcaa 40320686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 51 - 197
Target Start/End: Original strand, 8149937 - 8150082
Alignment:
Q  51 tgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtacc 150  Q
    ||||||||| ||| |||||||| ||| ||||||||| ||||| |||| ||| || ||| |||||||||||||||||||||||||||||||||||||| ||    
T  8149937 tgcatcgtgtcacattcctcctagatcgtgccacgaattttctagtggcaacccaaaaactgaaccattcaatcgtgccacattgccctgcaaacgtgcc 8150036  T
Q  151 acgatttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
    |||| ||||||| |||||| ||| ||||||||| ||  |||||||||    
T  8150037 acga-ttttccagacttcaccatcaattttgagtcaattttcaacaa 8150082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 6127725 - 6127820
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaa-tctgaaccattcaatcgtgccacattgccctgcaaacgt 147  Q
    ||||||| |||||||||  ||||| ||||||| ||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  6127725 catcgtgtcacgttcctattggatcgtgccacaatttttctagcgacaaacccaaaatctgaaccatccaatcgtgccacattgccctgcaaacgt 6127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 26402823 - 26402719
Alignment:
Q  54 atcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaa-tctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    |||||| ||||||| ||||| || ||||||||| ||||||||  | ||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||    
T  26402823 atcgtgtcacgttcatcctgaatcgtgccacgaattttccagctataaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 26402724  T
Q  153 gattt 157  Q
    |||||    
T  26402723 gattt 26402719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 6127643 - 6127715
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    |||||||||||||||||||||| ||||| |||||||||  ||||||||||||||| |||||||| ||||||||    
T  6127643 tggagcaggtgatagtacagtactataccttatccgtccacatcgtgccacgttcttcctggatcgtgccacg 6127715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 30291275 - 30291216
Alignment:
Q  137 cctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    ||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||    
T  30291275 cctgcaaacgtgcgacgatttttccagacttcaacatcaattttgagacacatttcaaca 30291216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 26402905 - 26402837
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgcc 82  Q
    |||||||||| ||||||||||| ||||| |||||||||  |||||||||||||||||||||||| |||||    
T  26402905 tggagcaggt-atagtacagtactataccttatccgtccacatcgtgccacgttcctcctggatcgtgcc 26402837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 30291374 - 30291311
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggat 76  Q
    ||||||||||||||||||| || | ||| |||||||||||||||||| || ||| |||||||||    
T  30291374 tggagcaggtgatagtacaatactttaccttatccgtctgcatcgtgtcatgtttctcctggat 30291311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 3039361 - 3039505
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaa-tctgaaccattcaatcgtgccacattgccctgcaaacgtacca 151  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||||| |||    
T  3039361 catcgtgccacgttcctcctggattttgccacgatttttccagcgacaaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 3039460  T
Q  152 cgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||    
T  3039461 cgattttcccaaacttcaacataaattttgagacacatttcaaca 3039505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 21801012 - 21800909
Alignment:
Q  57 gtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatt 156  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||| ||||||||    
T  21801012 gtgccatgttcctcttggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtaccacgttgccctgcaaacgtgccacgatt 21800913  T
Q  157 tttc 160  Q
    ||||    
T  21800912 tttc 21800909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 4045065 - 4045005
Alignment:
Q  144 acgtaccacgatttttccaaacttcaacattaattttgagacacatttcaacaacaacaat 204  Q
    |||| ||||||||| | || |||||||||| ||||||||||||||||||||||||||||||    
T  4045065 acgtgccacgatttcttcagacttcaacatcaattttgagacacatttcaacaacaacaat 4045005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 24526344 - 24526486
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatc-tgaaccattcaatcgtgccacattgccctgcaaacgtacca 151  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||| |||    
T  24526344 catcatgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 24526443  T
Q  152 cgatttttccaaacttcaacattaattttgagacacatttcaa 194  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  24526444 cgatttttccaaacttcaacttcaattttgagacacatttcaa 24526486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 78 - 197
Target Start/End: Original strand, 12098250 - 12098369
Alignment:
Q  78 gtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaat 177  Q
    |||||||||||||||||||| ||| || ||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||| |||    
T  12098250 gtgccacgatttttccagtggcaatccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgatttttccaaacttcaacatcaat 12098349  T
Q  178 tttgagacacatttcaacaa 197  Q
    ||||||||||||||||||||    
T  12098350 tttgagacacatttcaacaa 12098369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 22269464 - 22269351
Alignment:
Q  66 tcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaac 165  Q
    ||||||||||| |||||||||||||||||||||||| ||||||  ||||||||  ||||||||||| ||||||||||||||| |||||||||||||| ||    
T  22269464 tcctcctggatcgtgccacgatttttccagtgacaa-cccaaacttgaaccatcaaatcgtgccacgttgccctgcaaacgtgccacgatttttccagac 22269366  T
Q  166 ttcaacattaatttt 180  Q
    |||| ||| ||||||    
T  22269365 ttcaccatcaatttt 22269351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 29160224 - 29160365
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctg 112  Q
    |||||||||| ||||||||||| ||||| ||||||  || |||||||||||||||||||||||| |||||  |||||||| ||||||||| ||||| |||    
T  29160224 tggagcaggt-atagtacagtagtataccttatcca-ctacatcgtgccacgttcctcctggatcgtgccttgatttttc-agtgacaaagccaaacctg 29160320  T
Q  113 aaccattcaatcgtgccacattgccctgcaaa-cgtaccacgatt 156  Q
    |||||  |||||||||||| |||||||||||| ||| ||||||||    
T  29160321 aaccaaccaatcgtgccacgttgccctgcaaatcgtgccacgatt 29160365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 41317954 - 41318034
Alignment:
Q  116 cattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  41317954 cattcaatcgtgccacgttgccctacaaacgtgccacgatttttccaaacttcaacttcaattttgagacacatttcaaca 41318034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 8153080 - 8152947
Alignment:
Q  68 ctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaactt 167  Q
    |||||| || ||||||| |||||||||||| ||| || |||  |||||||||||||| |||||  ||||||||||||||| |||||| ||||||||||||    
T  8153080 ctcctgcatcgtgccacaatttttccagtgtcaacccaaaaattgaaccattcaatcctgccatgttgccctgcaaacgtgccacgagttttccaaactt 8152981  T
Q  168 caacatta-----attttgagacacatttcaaca 196  Q
    |||||| |     |||||||||||||||||||||    
T  8152980 caacatcacatcaattttgagacacatttcaaca 8152947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 24526283 - 24526340
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctc 70  Q
    |||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||    
T  24526283 tggagcaggtgatagtacagtactataccttatccgactacatcgtgccacgttcctc 24526340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 22269542 - 22269478
Alignment:
Q  9 acgttggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctg 73  Q
    ||||||||||||||||||||||| || || || ||||||||||| || |||||||||||||||||    
T  22269542 acgttggagcaggtgatagtacaatactacaccttatccgtctgaattgtgccacgttcctcctg 22269478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 41317870 - 41317935
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaac 115  Q
    ||||||||||||||||  |||||| || ||||||||||||||| |||| ||| || ||| ||||||    
T  41317870 ctgcatcgtgccacgtatctcctgcatcgtgccacgatttttcgagtggcaacccaaaaactgaac 41317935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 28266011 - 28266158
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| |    
T  28266011 ctgcatcgtgccatgttcctcttggatcgtgccacgatttttccagtggcaacccaaaatctgaaccattcaatcgtgccacgttgccctgcaaacgtgc 28266110  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
    || ||||||| |||||||| |||| |||||||||||||||||||||||    
T  28266111 catgattttttcaaacttccacatcaattttgagacacatttcaacaa 28266158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 776991 - 776847
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtac 149  Q
    ||||||||||||||||||||||||| | |||||||||||||| || || ||| |  ||| |||||||||||||||||||||  || |||| ||||||| |    
T  776991 ctgcatcgtgccacgttcctcctgggtcgtgccacgattttttcaatggcaatcaaaaa-ctgaaccattcaatcgtgccagttt-ccctacaaacgtgc 776894  T
Q  150 cacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  776893 cacgatttttccaaacttcaacttcaattttgagacacatttcaaca 776847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 50167608 - 50167737
Alignment:
Q  68 ctcctggattgtgccacgatttttccagtgacaaacccaaat-ctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaact 166  Q
    |||||| || |||||||||||||||||||| ||| || |||  ||||| ||||||||  || ||| ||||||||||||||| ||||||||||||||||||    
T  50167608 ctcctgcatcgtgccacgatttttccagtggcaacccaaaaaactgaatcattcaattatgtcacgttgccctgcaaacgtgccacgatttttccaaact 50167707  T
Q  167 tcaacattaattttgagacacatttcaaca 196  Q
    ||||||||||||||||||||||||||||||    
T  50167708 tcaacattaattttgagacacatttcaaca 50167737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 47255992 - 47256134
Alignment:
Q  54 atcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccacg 153  Q
    ||||||||||  ||||||| ||| |||||||||||||||||||||||| | |||| ||||||||| |||||||||||| |||| |||||||||| |||||    
T  47255992 atcgtgccacactcctcctagatcgtgccacgatttttccagtgacaa-ctcaaacctgaaccatccaatcgtgccacgttgcactgcaaacgtgccacg 47256090  T
Q  154 atttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
    ||||||||| |||||| ||| ||||||||| ||  |||||||||    
T  47256091 atttttccagacttcaccatcaattttgagtcaattttcaacaa 47256134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 50169630 - 50169759
Alignment:
Q  68 ctcctggattgtgccacgatttttccagtgacaaacccaaat-ctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaact 166  Q
    |||||| || |||||||||||||| ||||| ||| || |||  |||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||    
T  50169630 ctcctgcatcgtgccacgatttttacagtggcaacccaaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgatttttctaaact 50169729  T
Q  167 tcaacattaattttgagacacatttcaaca 196  Q
    ||||||| |||||| ||| |||||||||||    
T  50169730 tcaacatcaattttaagagacatttcaaca 50169759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 47703532 - 47703428
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    ||||||||||||||||| |||||| |||| |||| |||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||| || | ||    
T  47703532 catcgtgccacgttccttctggatcgtgctacgaattttccagcgacaaacccaaatttgaaccatccaatcgtgccacgttgccctgcaaatgtgctac 47703433  T
Q  153 gattt 157  Q
    |||||    
T  47703432 gattt 47703428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 40816435 - 40816325
Alignment:
Q  50 ctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattg-ccctgcaaacgta 148  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||||| |||  ||| |||||||||| |     
T  40816435 ctgcatcgtgccacgttcctcctggatcgtgccacgatttttccaatgacaaa-ccaaacctgaaccatccaatcgtaccatgttgcccctgcaaacatg 40816337  T
Q  149 ccacgatttttc 160  Q
    ||||||||||||    
T  40816336 ccacgatttttc 40816325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 8871591 - 8871666
Alignment:
Q  121 aatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  8871591 aatcgtgtcacgttgccctgcaaacgtgccacgatttttccagacttcaacatcaattttgagacacatttcaaca 8871666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 45644824 - 45644898
Alignment:
Q  122 atcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaaca 196  Q
    |||||||||| ||||||||||||||| ||||||||||||||  ||||||| | ||||||||||||||||||||||    
T  45644824 atcgtgccacgttgccctgcaaacgtgccacgatttttccaggcttcaacttcaattttgagacacatttcaaca 45644898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 19073349 - 19073400
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacg 64  Q
    ||||||||||||||||||| || ||||| ||| |||||| ||||||||||||    
T  19073349 tggagcaggtgatagtacaatactataccttacccgtctacatcgtgccacg 19073400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 19121239 - 19121290
Alignment:
Q  13 tggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacg 64  Q
    ||||||||||||||||||| || ||||| ||| |||||| ||||||||||||    
T  19121239 tggagcaggtgatagtacaatactataccttacccgtctacatcgtgccacg 19121290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 30790856 - 30790908
Alignment:
Q  110 ctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttcca 162  Q
    ||||| ||| ||||||||||||||||| ||||||||||  |||||||| ||||    
T  30790856 ctgaaacatccaatcgtgccacattgctctgcaaacgtgtcacgatttctcca 30790908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 10282178 - 10282316
Alignment:
Q  20 ggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaaccc-aaatctgaaccat 118  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |||||||||    
T  10282178 ggtgatagtacagtactataccttatccgtctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagcgacaaacccaaaacctgaaccat 10282277  T
Q  119 tcaatcgtgccacattgccctgcaaacgtaccacgattt 157  Q
     |||||||||||| ||||||||||||||| |||||||||    
T  10282278 ccaatcgtgccacgttgccctgcaaacgtgccacgattt 10282316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 28277881 - 28277694
Alignment:
Q  9 acgttggagcaggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaa 108  Q
    |||||||||||||||||| ||||||| || || ||||||||||| ||||||||||  ||||||||||| ||||||| ||||||||| |||| ||||||||    
T  28277881 acgttggagcaggtgatattacagtactacaccttatccgtctgaatcgtgccacactcctcctggatcgtgccacaatttttccaatgac-aacccaaa 28277783  T
Q  109 tctgaaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttccaaacttcaacattaattttgagacacatttcaacaa 197  Q
     || |||||| |||||||||||| ||||||||||||||| |||||||||||| | |||||| ||| ||||||||| ||  |||||||||    
T  28277782 cctaaaccatccaatcgtgccacgttgccctgcaaacgtgccacgatttttctagacttcaccatcaattttgagtcaattttcaacaa 28277694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 3881233 - 3881338
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaaccc-aaatctgaaccattcaatcgtgccacattgccctgcaaacgtacca 151  Q
    |||||| ||||||||||||||||| |||||||||||||||||  || |||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||    
T  3881233 catcgtaccacgttcctcctggatcgtgccacgatttttccaacgataaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 3881332  T
Q  152 cgattt 157  Q
    ||||||    
T  3881333 cgattt 3881338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 16642578 - 16642627
Alignment:
Q  113 aaccattcaatcgtgccacattgccctgcaaacgtaccacgatttttcca 162  Q
    |||||| |||||||||||| |||| |||||||||| ||||||||||||||    
T  16642578 aaccatccaatcgtgccacgttgctctgcaaacgtgccacgatttttcca 16642627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 5552 - 5456
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacg-atttttccagtgacaaacccaaa-tctgaaccattcaatcgtgccacattgccctgcaaacgt 147  Q
    ||||||||||||||| | ||| || |||||||| |||||||||| |||||||||||| ||||||||||  ||||||||||| |||||||||||||||    
T  5552 catcgtgccacgttctttctgcatcgtgccacgtatttttccagcgacaaacccaaaatctgaaccatctaatcgtgccacgttgccctgcaaacgt 5456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5627 - 5562
Alignment:
Q  20 ggtgatagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    |||||||||||| || ||||| |||||||||||||| ||| ||| |||||||||||| ||||||||    
T  5627 ggtgatagtacaataatataccttatccgtctgcattgtgacacattcctcctggatcgtgccacg 5562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 11231 - 11335
Alignment:
Q  53 catcgtgccacgttcctcctggattgtgccacgatttttccagtgacaaacccaaatctgaaccattcaatcgtgccacattgccctgcaaacgtaccac 152  Q
    ||||||||||||||||| ||  || ||||||| | ||||| ||  |||||| ||| ||||||||||  ||||||||||| ||||||||||||||| ||||    
T  11231 catcgtgccacgttccttctaaatcgtgccacaaattttcgagcaacaaactcaattctgaaccatctaatcgtgccacgttgccctgcaaacgtgccac 11330  T
Q  153 gattt 157  Q
    |||||    
T  11331 gattt 11335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 11161 - 11221
Alignment:
Q  24 atagtacagtattatactttatccgtctgcatcgtgccacgttcctcctggattgtgccacg 85  Q
    ||||||||||| ||||| ||||||| || |||||||||||||| ||| ||||| ||||||||    
T  11161 atagtacagtactataccttatccg-ctacatcgtgccacgtttctcttggatcgtgccacg 11221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University