View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_low_5 (Length: 434)
Name: NF3313_low_5
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 2627860 - 2628270
Alignment:
| Q |
6 |
gtcgaagaatatgggagctacgatgaggttttctgtgtaacatcaaccccctatgattcacacatgtaattgaattttgtttttctttgattttctaccg |
105 |
Q |
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|||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627860 |
gtcgtagaaaattggagctaccatgaggttttctgtgtaacatcaaccccctatgattcacacatgtaattgaattttgtttttctttgattttctacca |
2627959 |
T |
|
| Q |
106 |
ccttatcatatatcctttgtttgcaaagttgttctgtgtcaaggttgtaacaaggtgttgcatctcaccaaaactttcgaaatgaaatccgaagaggcag |
205 |
Q |
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| T |
2627960 |
ccttatcatatatcctttgtttgcaaagttgttctgtgtcaaggttgtaacaaggtgttgcgtctcaccaaaactttcgaaatgaaatccgaagaggcag |
2628059 |
T |
|
| Q |
206 |
cagtagcactagtggagagagaaccatgtactggagagttagccatgaacctcaagcttccacgcctgcatttggagacagcgcaggaaatgtcccctca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628060 |
cagtagcactagtggagagagaaccatgtactggagagttagccatgaacctcaagcttccacgcctgcatttggagacagcgcaggaaatgtcccctca |
2628159 |
T |
|
| Q |
306 |
cggctggagatggtccgatggaaatggaaggattgagaccgatattcacagcaacatattcatcaagtctagtcttctcaacgaagaagatttcaaaagt |
405 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628160 |
cggctggagatggtccgatggagatggaaggattgagaccgatattcacaccaacatattcatcaagtctagtcttctcaacgaagaagatttcaaaagt |
2628259 |
T |
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| Q |
406 |
atgcatggaaa |
416 |
Q |
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||||||||||| |
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| T |
2628260 |
atgcatggaaa |
2628270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 2553073 - 2552966
Alignment:
| Q |
308 |
gctggagatggtccgatggaaatggaaggattgagaccgatattcacagcaacatattcatcaagtctagtcttctcaacgaagaagatttcaaaagtat |
407 |
Q |
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| T |
2553073 |
gctggagatggtctgatggaaatcgaaggattaaca--gatatttacaccaacatattcaccaagtctagccttctcaatgaagaagacttcacaagcat |
2552976 |
T |
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| Q |
408 |
gcatggaaat |
417 |
Q |
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|||||||||| |
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| T |
2552975 |
gcatggaaat |
2552966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 2553220 - 2553176
Alignment:
| Q |
205 |
gcagtagcactagtggagagagaaccatgtactggagagttagcc |
249 |
Q |
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| T |
2553220 |
gcagtagcactagtggagagaaaaccatggactggagagttagcc |
2553176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 418
Target Start/End: Complemental strand, 39519610 - 39519495
Alignment:
| Q |
301 |
cctcacggctggagatggtccgatggaaatggaaggattgagaccgatattcacagcaacatattcatcaagtctagtcttctcaacgaagaagatttca |
400 |
Q |
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|||||||||||| || |||| ||||||||| ||||| || | | ||||| ||| ||||||||||| ||| ||||| ||||||||||||||||| ||| |
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| T |
39519610 |
cctcacggctggggacggtctgatggaaattgaagggttaacaa--atatttacaccaacatattcaccaattctagccttctcaacgaagaagaattct |
39519513 |
T |
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| Q |
401 |
aaagtatgcatggaaatg |
418 |
Q |
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||||| |||||| |||| |
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| T |
39519512 |
gaagtacgcatggcaatg |
39519495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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