View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3313_low_7 (Length: 404)

Name: NF3313_low_7
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3313_low_7
NF3313_low_7
[»] chr1 (1 HSPs)
chr1 (85-404)||(29792402-29792721)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 85 - 404
Target Start/End: Original strand, 29792402 - 29792721
Alignment:
Q  85 cttgtctaacccttttgaacacggtttctctgtatcaggaaataaggtatcggcaacacactgtcgtagtttctgtctctttctagagaagatgtctcca 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29792402 cttgtctaacccttttgaacacggtttctctgtatcaggaaataaggtatcggcaacacactgtcgtagtttctgtctctttctagagaagatgtctcca 29792501  T
Q  185 tcctcatactggtttcctgaagtaccatgtagtaaattgtcttacactaactatatcaatacattctcaaatataatcattaaatgtgacgtcttcagct 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29792502 tcctcatactggtttcctgaagtaccatgtagtaaattgtcttacacaaactatatcaatacattctcaaatataatcattaaatgtgacgtcttcagct 29792601  T
Q  285 gcataaaacacattttccctaaaattatgaatttaacatgtgaagattaattaacaaatgagtggaccctgtcaaagattggcactaagctactgaagac 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29792602 gcataaaacacattttccctaaaattatgaatttaacatgtgaagattaattaacaaatgagtggaccctgtcaaagattggcactaaactactgaagac 29792701  T
Q  385 cgagtaatataaactatata 404  Q
    ||||||||||||||||||||    
T  29792702 cgagtaatataaactatata 29792721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University