View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3313_low_8 (Length: 373)
Name: NF3313_low_8
Description: NF3313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3313_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 45282543 - 45282887
Alignment:
| Q |
19 |
atatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282543 |
atatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatact |
45282642 |
T |
|
| Q |
119 |
ctttcttcattcataagtacataattaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtctt |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45282643 |
ctttcttcattcataagtaaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtctt |
45282742 |
T |
|
| Q |
219 |
gacaccagcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtat |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282743 |
gacaccagcagcaaagctctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtat |
45282842 |
T |
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| Q |
319 |
tcgtcatagacaccggccttaacgtagataacatatctgcctttg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282843 |
tcgtcatagacaccggccttaacgtagataacatatctgcctttg |
45282887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 45274300 - 45274646
Alignment:
| Q |
19 |
atatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatact |
118 |
Q |
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||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
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| T |
45274300 |
atatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatact |
45274399 |
T |
|
| Q |
119 |
ctttcttcattcataag-tacataattaattaaataaaataaaaaa-gttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtc |
216 |
Q |
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||||||||| ||||||| || | ||||||| ||||||||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45274400 |
ctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtc |
45274499 |
T |
|
| Q |
217 |
ttgacaccagcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgt |
316 |
Q |
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||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45274500 |
ttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgt |
45274599 |
T |
|
| Q |
317 |
attcgtcatagacaccggccttaacgtagataacatatctgcctttg |
363 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||| |
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|
| T |
45274600 |
attcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
45274646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 48 - 363
Target Start/End: Original strand, 45293957 - 45294275
Alignment:
| Q |
48 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactctttcttcattcataag-tacataatt |
144 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||| |||| |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45294056 |
T |
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| Q |
145 |
aattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
244 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
45294057 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45294156 |
T |
|
| Q |
245 |
cggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgta |
344 |
Q |
| |
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|||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||| |
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| T |
45294157 |
cggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgta |
45294256 |
T |
|
| Q |
345 |
gataacatatctgcctttg |
363 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
45294257 |
gatagtatatctgcctttg |
45294275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 48 - 363
Target Start/End: Original strand, 45302917 - 45303235
Alignment:
| Q |
48 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcata--tactctttcttcattcataag-tacataatt |
144 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||| |||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaatt |
45303016 |
T |
|
| Q |
145 |
aattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctac |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
45303017 |
tattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttc |
45303116 |
T |
|
| Q |
245 |
cggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgta |
344 |
Q |
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|||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||| |
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| T |
45303117 |
cggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgta |
45303216 |
T |
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| Q |
345 |
gataacatatctgcctttg |
363 |
Q |
| |
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|||| ||||||||||||| |
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| T |
45303217 |
gatagtatatctgcctttg |
45303235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 45 - 363
Target Start/End: Original strand, 45270796 - 45271113
Alignment:
| Q |
45 |
tatatcttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataag-tacataa |
142 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||||| |||| || |
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|
| T |
45270796 |
tatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaa |
45270895 |
T |
|
| Q |
143 |
ttaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttct |
242 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||| |||||||||||| |||||||| || | | || ||| ||| || | ||||||| |
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|
| T |
45270896 |
ttaattaaataaaataaaa--gctttgatcgat-ataactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttct |
45270992 |
T |
|
| Q |
243 |
accggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacg |
342 |
Q |
| |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270993 |
accagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacg |
45271092 |
T |
|
| Q |
343 |
tagataacatatctgcctttg |
363 |
Q |
| |
|
||||||||||||||| ||||| |
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|
| T |
45271093 |
tagataacatatctgtctttg |
45271113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
316 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
361 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| |||| |
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|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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