View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3314_low_3 (Length: 241)

Name: NF3314_low_3
Description: NF3314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3314_low_3
NF3314_low_3
[»] chr4 (17 HSPs)
chr4 (8-241)||(7907766-7907999)
chr4 (72-241)||(7877231-7877394)
chr4 (71-241)||(7774233-7774397)
chr4 (146-241)||(7904611-7904706)
chr4 (184-241)||(7800254-7800311)
chr4 (184-241)||(7813097-7813154)
chr4 (184-241)||(7822586-7822643)
chr4 (148-241)||(45366625-45366718)
chr4 (155-239)||(45372463-45372547)
chr4 (137-241)||(48902520-48902624)
chr4 (130-241)||(45385191-45385302)
chr4 (183-241)||(48156831-48156889)
chr4 (184-241)||(49044633-49044690)
chr4 (184-241)||(49049003-49049060)
chr4 (192-235)||(48898347-48898390)
chr4 (139-241)||(48735719-48735821)
chr4 (184-241)||(7771021-7771078)
[»] chr8 (3 HSPs)
chr8 (174-241)||(12199914-12199981)
chr8 (174-241)||(12444342-12444409)
chr8 (184-241)||(15348479-15348536)
[»] chr3 (2 HSPs)
chr3 (184-235)||(11006372-11006423)
chr3 (158-241)||(47452311-47452394)
[»] chr6 (1 HSPs)
chr6 (195-241)||(21980048-21980094)
[»] chr1 (1 HSPs)
chr1 (184-238)||(24340031-24340085)
[»] chr5 (2 HSPs)
chr5 (192-241)||(29687676-29687725)
chr5 (189-241)||(29712873-29712925)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 7907766 - 7907999
Alignment:
Q  8 catcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattaaggtttacaagatggtagag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7907766 catcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattagggtttacaagatggtagag 7907865  T
Q  108 agctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  7907866 agctcggaggagaagaagaagaagacgacgacactgccgtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacac 7907965  T
Q  208 gtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||||||||||||| |||||||||||||||||||    
T  7907966 gtttcaagtctgttcgtaagtcatggttttctct 7907999  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 7877231 - 7877394
Alignment:
Q  72 ccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttcc 171  Q
    |||||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||      || ||||||||||| ||||||||||||| |||    
T  7877231 ccttcctgtaaaattaggatttacaagatggtagagtgcatggaggagaagaagaagaagac------acggccgtatcttcctcatgaattgattatcc 7877324  T
Q  172 agatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    | |||||  | ||||||| |||||||||||||  ||||||||| |   ||||||||  ||||||||||||    
T  7877325 aaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctct 7877394  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 7774397 - 7774233
Alignment:
Q  71 cccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttc 170  Q
    ||||| ||||||||||| |||||||||||||||||||||| || ||||||||||| ||||      ||||||||||||||||| ||||||||||||| |     
T  7774397 ccctttctgtaaaattagggtttacaagatggtagagagcacgcaggagaagaagcagaa------gacactgccgtatcttcctcatgaattgattatt 7774304  T
Q  171 cagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    || ||| |  || || |||||||||||||||||   | |||||| | ||||||||||  ||||||||||||    
T  7774303 caaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctct 7774233  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 7904611 - 7904706
Alignment:
Q  146 gtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||||||| || |||||||||| | || ||| |  |||||||||| ||||||||||||  ||||||||| | ||||||||||| ||||||||||||    
T  7904611 gtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctct 7904706  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 7800254 - 7800311
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||    
T  7800254 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctct 7800311  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 7813097 - 7813154
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||    
T  7813097 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctct 7813154  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 7822586 - 7822643
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| ||||||||||||||    
T  7822586 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctct 7822643  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 45366718 - 45366625
Alignment:
Q  148 atcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||||| ||||||||||||  |||| ||||||||  |||| || ||||||||||||  |||||||||||  ||||||||||  |||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctct 45366625  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 45372547 - 45372463
Alignment:
Q  155 tcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttct 239  Q
    ||||||||||||  | || || |||||  ||||||||||||||||||||  ||||||||| | |||||||||||| |||||||||    
T  45372547 tcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttct 45372463  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 48902520 - 48902624
Alignment:
Q  137 gacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 236  Q
    ||||||||||||||| | ||||||||||||  |||| ||  | | |||||||||||| ||||||||    |||||||| | |||||||||||| ||||||    
T  48902520 gacactgccgtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttt 48902619  T
Q  237 tctct 241  Q
    |||||    
T  48902620 tctct 48902624  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 45385302 - 45385191
Alignment:
Q  130 agacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtc 229  Q
    ||||||||||||||||| || | | | ||||||||||  |||| ||||||||  |||| || || ||||||||   ||||||||| || |||||||||||    
T  45385302 agacgacgacactgccgcatatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtc 45385203  T
Q  230 atggttttctct 241  Q
     |||||||||||    
T  45385202 ttggttttctct 45385191  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 48156889 - 48156831
Alignment:
Q  183 tggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||| |||||||||||||||  |||||||||||  ||||||||||| |||||||||||    
T  48156889 tggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctct 48156831  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 49044690 - 49044633
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||| |||| |||||||  ||||||||||| ||||||||||| ||||||||||||    
T  49044690 ggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctct 49044633  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 49049060 - 49049003
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||||| ||||| |||||||  ||||||||||| ||||||||||| ||||||||||||    
T  49049060 ggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctct 49049003  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 48898347 - 48898390
Alignment:
Q  192 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggtt 235  Q
    |||||||||||| |||||||||||| |||||||||||| |||||    
T  48898347 gtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggtt 48898390  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 48735821 - 48735719
Alignment:
Q  139 cactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttc 238  Q
    ||||||||| ||| | |||||| |||||  | || || || ||| |||| |||||||||||||||   |||||||| | |||||||||||| ||||||||    
T  48735821 cactgccgtttctgcctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttc 48735722  T
Q  239 tct 241  Q
    |||    
T  48735721 tct 48735719  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 7771021 - 7771078
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||||||||||||||||  | ||||||| |  ||||||||||| |||||||||||    
T  7771021 ggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctct 7771078  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 12199914 - 12199981
Alignment:
Q  174 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | ||||||||||||||||||||||||    
T  12199914 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctct 12199981  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 12444342 - 12444409
Alignment:
Q  174 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | ||||||||||||||||||||||||    
T  12444342 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctct 12444409  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 15348479 - 15348536
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||| |||||||||||||||  ||||||||| |  ||||||||||| |||||||||||    
T  15348479 ggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 15348536  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 11006423 - 11006372
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggtt 235  Q
    |||||||||||||||| |||  ||||||||||| ||||||||||||||||||    
T  11006423 ggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 11006372  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 47452394 - 47452311
Alignment:
Q  158 tgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||||||||  |||||||| |  || ||||||||||||||||||||| ||| |||||||   ||| ||||||||||||||||||    
T  47452394 tgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctct 47452311  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 21980094 - 21980048
Alignment:
Q  195 aagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||||  |||||||||||| |||||||||||| |||||||||||    
T  21980094 aagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctct 21980048  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 24340031 - 24340085
Alignment:
Q  184 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttc 238  Q
    |||| ||||| |||||||||   |||||||| |||||||||||||||||||||||    
T  24340031 ggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttc 24340085  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 29687676 - 29687725
Alignment:
Q  192 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    ||||||||||||  ||| ||||||| |||||||||||| |||||||||||    
T  29687676 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 29712925 - 29712873
Alignment:
Q  189 ccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttttctct 241  Q
    |||||||||||||||   ||||||||||  |||||||||| ||||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctct 29712873  T

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