View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3315_high_7 (Length: 221)
Name: NF3315_high_7
Description: NF3315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3315_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 33235954 - 33235763
Alignment:
| Q |
18 |
ttatgttggaagtgtcaccaacctttctaaccatattaggaggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaac |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33235954 |
ttatgttggaagtgtcgccaacctttctaaccatattaggaggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaac |
33235855 |
T |
|
| Q |
118 |
ataaggccaaagctcaaccttcttctttgtagattgagcagctttcaacactttctttggttcaacatatccactcactgttactctctgct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
33235854 |
ataaggccaaagctcaaccttcttctttgtagattgagcagctttcaacactttctttggttcaacatatccactcaccgttactttctgct |
33235763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 10652926 - 10652856
Alignment:
| Q |
58 |
aggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaa |
128 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||||||| |||||||| ||||||||| ||| ||||||| |
|
|
| T |
10652926 |
aggtgctttcttgtcataagcttgagatatataaggataagccaccaagttgtatggaatatatggccaaa |
10652856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University