View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3315_high_9 (Length: 218)
Name: NF3315_high_9
Description: NF3315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3315_high_9 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 21191109 - 21191297
Alignment:
| Q |
15 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
114 |
Q |
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| T |
21191109 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatagaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
21191208 |
T |
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| Q |
115 |
ataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt |
203 |
Q |
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| T |
21191209 |
ataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt |
21191297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 36466424 - 36466236
Alignment:
| Q |
15 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466424 |
cagagaagttgaagacattatggaaataaggggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttacttt |
36466325 |
T |
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| Q |
115 |
ataaacattcatagcttgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt |
203 |
Q |
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| T |
36466324 |
ataaacattcatagcttgttggatttgatgaaagtgagtggattgatatgttggcaatggcatgcaaatttgtaacaaccattcaattt |
36466236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 36471206 - 36471278
Alignment:
| Q |
131 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt |
203 |
Q |
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| T |
36471206 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccgttcaattt |
36471278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 29389630 - 29389558
Alignment:
| Q |
131 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcaaatttgtaacaaccattcaattt |
203 |
Q |
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| T |
29389630 |
tgttggatttgatcaaagtgagtggattgatatgttggtaatggcatgcgaatttgtaacaaccattcaattt |
29389558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 8697363 - 8697461
Alignment:
| Q |
29 |
acattatggaaataagg-ggaccaaacatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat |
126 |
Q |
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| T |
8697363 |
acattaaggagataaggaggaccatacatatgtagaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat |
8697461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 18388615 - 18388688
Alignment:
| Q |
53 |
acatacatcgaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat |
126 |
Q |
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| T |
18388615 |
acatacatggaagagatcagagataaactctacaacataattaaagagcttaagtttattttataaacgttcat |
18388688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 18593 - 18528
Alignment:
| Q |
62 |
gaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcata |
127 |
Q |
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| T |
18593 |
gaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcata |
18528 |
T |
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Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 20125 - 20189
Alignment:
| Q |
62 |
gaagggatcagaaataaactctacaacattattgaagagctcaagtttactttataaacattcat |
126 |
Q |
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| T |
20125 |
gaagggatcaaagataaactctacaacataattgaagagcttaagtttagtttatacacattcat |
20189 |
T |
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