View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3315_low_1 (Length: 646)
Name: NF3315_low_1
Description: NF3315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3315_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 317 - 567
Target Start/End: Complemental strand, 35248176 - 35247927
Alignment:
| Q |
317 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatg |
416 |
Q |
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| T |
35248176 |
gtaatacgaatcctgtgtgttctttgtagttttcaaaactttctgtgtgattacttcaagaagaagggattgtcaaacactgctaagattttcaaaaatg |
35248077 |
T |
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| Q |
417 |
aagctcatgttaccggacatattccccctggtatgcttaattttgcacccttttgctaatttttctttattcattttacccaaaaaactgtttcttctat |
516 |
Q |
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|||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
35248076 |
aagctcgagtttccggacatattctccctggtatgcttaattttgcacccttttgctaatttttctttattcattttaccca-aaaactgtttcttcttt |
35247978 |
T |
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| Q |
517 |
gatgctccttgcattatactattcatttgccttataatatggataattgag |
567 |
Q |
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| T |
35247977 |
gatgctccttgcattatactattcatttgccttataatatggataattgag |
35247927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 35248483 - 35248218
Alignment:
| Q |
15 |
atatatgtgacaatccaaaaagaaaccaacnnnnnnnnnctaaccagacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgact |
114 |
Q |
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| T |
35248483 |
atatatgtgacaatccaaaaacaaaccaacaaaaaaaaactaaccacacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgact |
35248384 |
T |
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| Q |
115 |
ctgcatggtcactcgctattttcttgcagtacttcactttctctcctttcattttctttcattaatcatcttcttcatctaagtgcaacaaccatttcct |
214 |
Q |
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| T |
35248383 |
ctgcatggtcactcgctattgtcttgcagtacttcactttctctcctttaattttctttcattaatcatcttcttcatctaagtgcaagaaccatttcct |
35248284 |
T |
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| Q |
215 |
ttaacatgg---------acccaaaagaagaactgtgagtagagtacaatgctgcttgcatgcatg |
271 |
Q |
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| T |
35248283 |
ttaacatggatacaaaaaatcccaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
35248218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 35254942 - 35254716
Alignment:
| Q |
54 |
ctaaccagacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgactctgcatggtcactcgctattttcttgcagtacttcactt |
153 |
Q |
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| T |
35254942 |
ctaaccacacacttaaccgccacagtataaaaatgaaaagattttcttgttatgcatgactctgcatggtcactcgctattgtcttgcagtacttcactt |
35254843 |
T |
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| Q |
154 |
tctctcctttcattttctttcattaatcatcttcttcatctaagtgcaacaaccatttcctttaacatgg---------acccaaaagaagaactgtgag |
244 |
Q |
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| T |
35254842 |
tctctccttttattttctttcattaatcatcttcttcatctaagtgcaagaaccatttcctttaacatggatacaaaaaatcccaaagaagaactgtgag |
35254743 |
T |
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| Q |
245 |
tagagtacaatgctgcttgcatgcatg |
271 |
Q |
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| T |
35254742 |
tagagtacaatgctgcatgcatgcatg |
35254716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 317 - 448
Target Start/End: Complemental strand, 35254674 - 35254543
Alignment:
| Q |
317 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35254674 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttcaaaaatg |
35254575 |
T |
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| Q |
417 |
aagctcatgttaccggacatattccccctggt |
448 |
Q |
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| T |
35254574 |
aagctcatgttaccggacattttccccctggt |
35254543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 330 - 428
Target Start/End: Complemental strand, 35272724 - 35272626
Alignment:
| Q |
330 |
tgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatgaagctcatgtta |
428 |
Q |
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| T |
35272724 |
tgtgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtta |
35272626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 35279442 - 35279400
Alignment:
| Q |
233 |
aagaactgtgagtagagtacaatgctgcttgcatgcatgcatg |
275 |
Q |
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| T |
35279442 |
aagaactgtgagtagagtacaatgctgcatgcatgcatgcatg |
35279400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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