View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3315_low_10 (Length: 220)
Name: NF3315_low_10
Description: NF3315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3315_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 35940187 - 35940376
Alignment:
| Q |
17 |
agtttgtagctataaaagatgatttttgtgtgacaaaaatgcagattcaatgctagcttgatgcttgaaacactccgtggaaagaggatgatgtttgttg |
116 |
Q |
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| T |
35940187 |
agtttgtagctataaaagatgatttttgtgtgacaaaaatgcagattcaatgctagcttgatgcttgaaacactccgtggaaagaggatgatgtttgttg |
35940286 |
T |
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| Q |
117 |
gagactctctcaatcgtggtcaatatgtttcttttgtgtgccttctccatcaactcattcctgaggatgctaaatccatggaaacctttg |
206 |
Q |
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| T |
35940287 |
gagactctctcaatcgtggtcaatatgtttcttttgtgtgccttctccatcaactcattcccgaggatgctaaatccatggaaacctttg |
35940376 |
T |
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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 32181483 - 32181637
Alignment:
| Q |
58 |
cagattcaatgctagcttgatgcttgaaacactccgtggaaagaggatgatgtttgttggagactctctcaatcgtggtcaatatgtttcttttgtgtgc |
157 |
Q |
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|||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| | || |
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| T |
32181483 |
cagattcaatgccagcttaatgctagaaacacttcgtgggaagaggatgatgtttgtcggggactctctcaatcggggtcagtatgtctctttgatatgt |
32181582 |
T |
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| Q |
158 |
cttctccatcaactcattcctgaggatgctaaatccatggaaacctttgcttctc |
212 |
Q |
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||||||||||| |||||||| | |||| ||||| ||||||||||||| ||||| |
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| T |
32181583 |
cttctccatcatctcattccccaacatgccaaatcgatggaaacctttgattctc |
32181637 |
T |
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