View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3315_low_2 (Length: 358)
Name: NF3315_low_2
Description: NF3315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3315_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 38828349 - 38828102
Alignment:
| Q |
19 |
attcttgtgtgtgtcacgggctatgggtggaggattgattaaaataaattgggttgtgagtagatgttttgtgggttctttctaatgactgttctttcga |
118 |
Q |
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| T |
38828349 |
attcttgtgtgtgtcacgggctatgggtgggggattgattaaaataaattgagttgtgagtagatgttttgtgggttctttctaatgactgttctttcga |
38828250 |
T |
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| Q |
119 |
gtgagacagtgatgaagacagtgtatgtatgaattgaattataaacaataaaacagatgtgtcatttaacaaccttgttcacgagccatgttattttaat |
218 |
Q |
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| T |
38828249 |
gtgagacagtgatgaagacagtgtatgtatgaattgaattataaagaataaaacagatgtgtcatttaacaaccttgttcacgagccatgttattttaat |
38828150 |
T |
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| Q |
219 |
taagcttaataattggtgtgatatattgtcttaatcaatacttatagt |
266 |
Q |
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| T |
38828149 |
taagcttaataattggtgtgatatattgtcttaatcaatacttatagt |
38828102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 38822822 - 38822736
Alignment:
| Q |
257 |
tacttatagtatacacaaaaaacatgttcccacggcatcggctcgtacctgtttgaggagttctaccgggtggtccagcgtcacagg |
343 |
Q |
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| T |
38822822 |
tacttatagtatacacaaaaaacatgttcccacggcatcggctcgtacctgtttgaggagttctaccgggtggtccagcgtcacagg |
38822736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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