View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3315_low_4 (Length: 321)
Name: NF3315_low_4
Description: NF3315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3315_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 35928817 - 35929119
Alignment:
| Q |
1 |
gtttcaactcaaatcccacaaaggactagagttcaaattatgatcatgtgaggatctcattgattgataaatatgtaagtagttatgttagtacttcgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |
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| T |
35928817 |
gtttcaactcaaatcccacaaaggactagagttcaaattatgatcatgtgaggatctcattgattgataaatatggaagtagttatgtcagtactttgta |
35928916 |
T |
|
| Q |
101 |
agcttaaatgtaagcttttaccgactcgtgtaaactttattttatcgaaaaagaaccgtccaatatataaattttaaaatagatgacttaaatactttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928917 |
agcttaaatgtaagcttttaccgactcgtgtaaactttattttatcgaaaaagaaccgtccaatatataaattttaaaatagatgacttaaatactttta |
35929016 |
T |
|
| Q |
201 |
gatggaaaatacttaataaataatgtgaaaacaaacagttcaagaatgtccaagcataccctcaagcaacggccacaagaagcttggccttgaggaccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929017 |
gatggaaaatacttaataaataatgtgaaaacaaacagttcaagaatgtccaagcataccctcaagcaacggccacaagaagcttggccttgaggaccaa |
35929116 |
T |
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| Q |
301 |
cag |
303 |
Q |
| |
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||| |
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| T |
35929117 |
cag |
35929119 |
T |
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