View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3315_low_9 (Length: 221)

Name: NF3315_low_9

Description: NF3315

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3315_low_9

[»] chr3 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 180; E-Value: 2e-97

Query Start/End: Original strand, 18 - 209

Target Start/End: Complemental strand, 33235954 - 33235763

Alignment:

Q	18	ttatgttggaagtgtcaccaacctttctaaccatattaggaggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaac	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33235954	ttatgttggaagtgtcgccaacctttctaaccatattaggaggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaac	33235855	T

Q	118	ataaggccaaagctcaaccttcttctttgtagattgagcagctttcaacactttctttggttcaacatatccactcactgttactctctgct	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|
T	33235854	ataaggccaaagctcaaccttcttctttgtagattgagcagctttcaacactttctttggttcaacatatccactcaccgttactttctgct	33235763	T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 58 - 128

Target Start/End: Complemental strand, 10652926 - 10652856

Alignment:

Q	58	aggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaa	128	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	10652926	aggtgctttcttgtcataagcttgagatatataaggataagccaccaagttgtatggaatatatggccaaa	10652856	T

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