View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3316_high_3 (Length: 372)
Name: NF3316_high_3
Description: NF3316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3316_high_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 213 - 372
Target Start/End: Complemental strand, 45768665 - 45768506
Alignment:
| Q |
213 |
ccttgttcatttttgccaagaccctttcctttccaacccattttttgaagaagcttaaaaccaatattagaagaagttatgtgtgtgtcaagagaagctt |
312 |
Q |
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| T |
45768665 |
ccttgttcatttttgccaagaccctttcctttccaacccattttttgaagaagtttaaaaccaatattagaagaagttatgtgtgtgtcaagagaagctt |
45768566 |
T |
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| Q |
313 |
gttcaacattatccagatcaacgttttcagttggcctttgatttctgggcaagcgaaaat |
372 |
Q |
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| T |
45768565 |
gttcaacattatccagatcaacgttttcagttggcctttgatttctgggcaagcgaaaat |
45768506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 45768866 - 45768814
Alignment:
| Q |
14 |
agacggacaataaaaaggtaaggtttgtattataatttgtacatgtttatatg |
66 |
Q |
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| T |
45768866 |
agacggacaataaaaaggtaaggtttgtattataatttgtacatgtttatatg |
45768814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 45768776 - 45768733
Alignment:
| Q |
102 |
aagccttattagataatctttatttcattatacacatggattag |
145 |
Q |
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| T |
45768776 |
aagccttattagataatcttaatttcattatacacatggattag |
45768733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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