View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3316_high_5 (Length: 325)
Name: NF3316_high_5
Description: NF3316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3316_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 20054665 - 20054817
Alignment:
| Q |
162 |
ttgcatttctccgtaataaaagagttcaatatgtatggcacaaaacggcaaaccaaacacactgcccaaaatatatggtttcttctatattgaagttgaa |
261 |
Q |
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| T |
20054665 |
ttgcatttctccgtaataaaagagttcaatatgtatggcacaaaacggcaaaccaaacacactgcccaaaatatatggtttcttctatattgaagttgaa |
20054764 |
T |
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| Q |
262 |
ttttggaatcagtggaacagatga--ttctcctggaacggatgatctcctcct |
312 |
Q |
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| T |
20054765 |
ttttggaatcaatggaacagatgatctcctcctagaacagatgatatcctcct |
20054817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 20054491 - 20054625
Alignment:
| Q |
29 |
aaattattaggttatgtaataatttttacatatgttatttgctgtatgtatgcatctaatatctatagttattgaatctcaactttgggatatatataac |
128 |
Q |
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| T |
20054491 |
aaattattaggttatgtaataatttgtacctatgttatttgctgtatgtatgcatctaatatctatagttgttgaatctcaattttgggatatatataac |
20054590 |
T |
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| Q |
129 |
tagcacaaaacagtgattatctatagttcgtagtt |
163 |
Q |
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| T |
20054591 |
tagcacaaaacagtgattatctatatttcgtagtt |
20054625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 15782993 - 15783027
Alignment:
| Q |
262 |
ttttggaatcagtggaacagatgattctcctggaa |
296 |
Q |
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| T |
15782993 |
ttttggaatcagtggaacagatgatcctcctggaa |
15783027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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