View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3316_low_1 (Length: 2847)

Name: NF3316_low_1
Description: NF3316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3316_low_1
NF3316_low_1
[»] chr2 (34 HSPs)
chr2 (1974-2829)||(2473250-2474115)
chr2 (538-1299)||(2471816-2472593)
chr2 (4-485)||(2471298-2471767)
chr2 (2496-2822)||(2469510-2469831)
chr2 (1470-1719)||(10164618-10164867)
chr2 (2497-2800)||(2486045-2486342)
chr2 (1467-1615)||(2472762-2472905)
chr2 (2641-2800)||(2478513-2478672)
chr2 (2641-2800)||(2483017-2483176)
chr2 (1596-1719)||(11124490-11124616)
chr2 (1471-1603)||(11123435-11123564)
chr2 (1639-1725)||(2472905-2472991)
chr2 (1752-1844)||(2473020-2473112)
chr2 (570-701)||(39242728-39242859)
chr2 (2725-2800)||(2470761-2470836)
chr2 (1759-1844)||(10164484-10164570)
chr2 (574-671)||(12129165-12129262)
chr2 (572-721)||(36206432-36206587)
chr2 (1756-1844)||(11124650-11124744)
chr2 (284-337)||(41400989-41401041)
chr2 (2643-2706)||(2466342-2466405)
chr2 (1470-1548)||(32479404-32479482)
chr2 (2643-2704)||(2457718-2457779)
chr2 (323-405)||(44667148-44667228)
chr2 (1476-1518)||(26154636-26154678)
chr2 (1168-1205)||(2478087-2478124)
chr2 (2644-2704)||(2462289-2462349)
chr2 (289-377)||(8380983-8381071)
chr2 (289-405)||(42460636-42460751)
chr2 (1974-2017)||(10164268-10164311)
chr2 (1468-1507)||(31438795-31438834)
chr2 (572-672)||(42560469-42560571)
chr2 (1468-1518)||(28277509-28277559)
chr2 (1468-1518)||(29293053-29293103)
[»] chr3 (11 HSPs)
chr3 (1470-1723)||(50557678-50557923)
chr3 (295-411)||(12764400-12764516)
chr3 (294-373)||(53585310-53585389)
chr3 (289-377)||(34367162-34367250)
chr3 (294-365)||(52161336-52161408)
chr3 (1467-1516)||(23516581-23516630)
chr3 (1974-2019)||(50558225-50558270)
chr3 (1812-1844)||(50558020-50558052)
chr3 (570-638)||(339943-340013)
chr3 (226-363)||(39888700-39888837)
chr3 (1752-1786)||(50557949-50557983)
[»] chr1 (13 HSPs)
chr1 (1514-1717)||(32518526-32518725)
chr1 (1607-1723)||(38858616-38858738)
chr1 (289-389)||(35352724-35352824)
chr1 (226-389)||(10803457-10803620)
chr1 (1759-1844)||(38858497-38858583)
chr1 (1495-1592)||(50524554-50524647)
chr1 (233-343)||(7026512-7026622)
chr1 (1974-2020)||(38858279-38858325)
chr1 (625-700)||(39112706-39112781)
chr1 (1468-1507)||(29657920-29657959)
chr1 (1469-1507)||(12072061-12072099)
chr1 (1468-1518)||(12377211-12377261)
chr1 (1468-1518)||(38452494-38452544)
[»] chr7 (13 HSPs)
chr7 (1471-1716)||(46465826-46466063)
chr7 (1469-1648)||(21869399-21869574)
chr7 (1976-2041)||(21869916-21869981)
chr7 (1976-2041)||(21870675-21870739)
chr7 (1467-1518)||(36786046-36786097)
chr7 (1974-2041)||(46465497-46465564)
chr7 (298-410)||(44258315-44258424)
chr7 (1752-1789)||(21869643-21869680)
chr7 (1494-1549)||(41539929-41539984)
chr7 (1467-1549)||(22316794-22316875)
chr7 (1470-1516)||(31320374-31320420)
chr7 (1470-1516)||(35791644-35791690)
chr7 (1476-1518)||(36785488-36785530)
[»] chr5 (8 HSPs)
chr5 (1467-1644)||(8316264-8316446)
chr5 (310-392)||(28237939-28238021)
chr5 (289-392)||(13200127-13200231)
chr5 (289-377)||(29267203-29267291)
chr5 (289-392)||(12434499-12434602)
chr5 (323-405)||(12914305-12914385)
chr5 (289-356)||(29104715-29104782)
chr5 (1470-1516)||(1919613-1919659)
[»] scaffold0618 (1 HSPs)
scaffold0618 (278-410)||(8634-8766)
[»] chr8 (8 HSPs)
chr8 (278-410)||(44091144-44091276)
chr8 (571-673)||(5860245-5860349)
chr8 (280-363)||(13776378-13776461)
chr8 (1470-1518)||(15451207-15451255)
chr8 (1468-1518)||(45185041-45185091)
chr8 (570-694)||(1890892-1891004)
chr8 (570-672)||(16602609-16602713)
chr8 (570-675)||(21525084-21525194)
[»] chr6 (11 HSPs)
chr6 (1468-1622)||(24663199-24663360)
chr6 (1471-1519)||(8924872-8924920)
chr6 (1471-1519)||(8935129-8935177)
chr6 (248-392)||(34492964-34493108)
chr6 (1621-1719)||(24663635-24663733)
chr6 (570-675)||(30453633-30453738)
chr6 (1467-1518)||(1603994-1604045)
chr6 (289-331)||(10106071-10106113)
chr6 (248-343)||(7991834-7991930)
chr6 (1479-1519)||(8939835-8939875)
chr6 (1469-1507)||(8701343-8701381)
[»] chr4 (11 HSPs)
chr4 (299-410)||(24679260-24679371)
chr4 (572-671)||(32026114-32026213)
chr4 (291-383)||(45683808-45683898)
chr4 (230-338)||(42507953-42508061)
chr4 (1501-1585)||(23038022-23038102)
chr4 (612-670)||(10334541-10334599)
chr4 (1979-2041)||(23038068-23038130)
chr4 (358-410)||(2412622-2412674)
chr4 (1470-1518)||(10426055-10426103)
chr4 (572-672)||(10383436-10383537)
chr4 (296-394)||(40159479-40159576)
[»] scaffold0009 (3 HSPs)
scaffold0009 (1584-1648)||(4741-4805)
scaffold0009 (1584-1647)||(4131-4194)
scaffold0009 (1584-1647)||(4553-4616)
[»] scaffold0360 (1 HSPs)
scaffold0360 (618-673)||(14428-14483)


Alignment Details
Target: chr2 (Bit Score: 704; Significance: 0; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 1974 - 2829
Target Start/End: Original strand, 2473250 - 2474115
Alignment:
Q  1974 ggtagataagtagaatctatgaatttattccttcttaaccggtgc--ccgggagcattggataacattactcttttttaaatgcaaaatatttcctctag 2071  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||  ||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  2473250 ggtagataagtagaatctatgaatttattgcttcttaaccagtgcgcccgggggcattggatagcattacccttttttaaatgcaaaatatttcctctag 2473349  T
Q  2072 ttttttaggagacatttcaatattttggttcaatagtccataatgaa---------taccacattttcttaatcaatcaacaacaaaagttaaagtcgtg 2162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  2473350 ttttttaggagacatttcaatattttggttcaatagtccataatgaacataatgaataccacattttcttaatcaatcaacaacaaaagttaaagtcgtg 2473449  T
Q  2163 atctgtaacctttttcgtttcaccatgacaaagataaatattgattttgaattaacaaatattgtcaaataattttgtttgaaagtaagttaaatacaca 2262  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2473450 atctgtaacctttttcgtttcaccatgacaaagacaaatattgattttgaatgaacaaatattgtcaattaattttgtttgaaagtaagttaaatacaca 2473549  T
Q  2263 caaaatattaacaaggtaaaaagttaactcgaggtaaaaactcaaaattctagttctaccttaaaattggaattaatatattgagctaaaatcaatttta 2362  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2473550 caaaatattaacaaggtaaaaagttaactcgaggtaaaaactcagaattctagttctaccttaaaattggaattaatataatgagctaaaatcaatttta 2473649  T
Q  2363 ttctagaacattgaactatatatatattcaagtcaactctacaatatataaannnnnnnggtcaaagatatagacacgatttc-tttttgaaatgaaaaa 2461  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||    
T  2473650 ttctagaacattgaactatatatat--tcaagtcaactctacaatatataaatttttttggtcaaagatatagacacgatttcctttttgaaatgaaaaa 2473747  T
Q  2462 tatcttataatgacaaattttcatgttnnnnnnnttgtataaatacaacactagaccctcaacaattttcatcaaaaacccacaaaacgatttaacattc 2561  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2473748 tatcttataatgacaaattttcatgttaaaaaaattgtataaatacaacactagaccctcaacaattttcatcaaacacccacaaaacgatttaacattc 2473847  T
Q  2562 tgaaatttatagaaatcaggaaaatgggttcattttctctaatattgtgcatcttaggcttaatactcattgtgcatgttagtcacgttgcacatgccca 2661  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2473848 tgaaatttatagaaatcaggaaaatgggttcattttctctaatattctgcatgttaggcttaatactcattgtgcatgttagtcacgttgcacatgccca 2473947  T
Q  2662 agactcaccagcagactacgtgaatgcccacaaccaagcaagatcggcagttgatacaaatattaaaattccaaatattatttgggataacaaagttgct 2761  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  2473948 agactcaccagcagactacgtgaatgcccacaaccaagcaagatcggcagttgatacaaatattaaaattccaaacattatttgggacaacaaagttgct 2474047  T
Q  2762 gcttatgcacaaaattatgctaatcaacgcaaggattgtcaattggtccactccggtggtgaccgtta 2829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474048 gcttatgcacaaaattatgctaatcaacgcaaggattgtcaattggtccactccggtggtgaccgtta 2474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 538 - 1299
Target Start/End: Original strand, 2471816 - 2472593
Alignment:
Q  538 gagaggatggacatagaagtttacgtgagtgcatacaaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacat 637  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471816 gagaggatgggcatagaagtttacgtgagtgcatacaaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacat 2471915  T
Q  638 tattcaacatcatcaaatcattttatctttaaaaataacatcaattgtgtgaatgtgtctaaacctttttaaatttgagtttgttcccaagcaagcattt 737  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2471916 tattcaacatcatcaaatcatattatctttaaaaataacatcaattgtgtgaatgtgtctaaacc-ttttaaatttgagtttgttcccaagcaagcattt 2472014  T
Q  738 ctcaaggcattgtaggactaattgaaatattaggacaaatatgaatgatattttaccacaaatatgtcccnnnnnnnaggggataaatatgtcacttgac 837  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||    
T  2472015 ctcaaggcattgtaggactaattgaaatattaggacaaatatgaatgatattttaccacaaatatgtcactttttttaggggataaatatgtcacttgac 2472114  T
Q  838 tacataatctttttaaggcattgtaagtaactaactgcattcacttataatatctcatgttgaaattcgaagctgatcaagttgctacattgtggaatac 937  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472115 tacataatctttttaaggcattgtaagtaactaactgcattcacttataatatctcatgttgaaattcgaagctgatcaagttgctacattgtggaatac 2472214  T
Q  938 attcatctttcgttatatccaaattcttttggtatgtgttcgtaatttttatgtgtatacgtaatatatatat--------------------aataaac 1017  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||    
T  2472215 attcatctttcgttatatccaaattcttttggtatgtgttcgtaatttttatgtgtatacgtaatatatatatatatatatatatatatataaaataaac 2472314  T
Q  1018 cacaatatcagaaaatgtatgaatatttttactactgaatagtaactcatacttagaacgggtcagtcaaactactaatatttatacgtagaaaataaat 1117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472315 cacaatatcagaaaatgtatgaatatttttactactgaatagtaactcatacttagaacgggtcagtcaaactactaatatttatacgtagaaaataaat 2472414  T
Q  1118 tattgtattttttggcnnnnnnnnnnnnnnggaattgatatttttggttgttgaaatattcatgtacattttctgatattgaattatgtcnnnnnnnnnc 1217  Q
    ||||||||||||||||              | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |    
T  2472415 tattgtattttttggc--aaaaaaaaagaagaaattgatatttttggttgttgaaatattcatatacattttctgatattgaattatgtc-aaaaaaaac 2472511  T
Q  1218 ttttgatgcttnnnnnnnnnttgatattgaattatatattctatcctctttaactgttgattttgcagatattttcccattc 1299  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472512 ttttgatgcttaaaaaaaaattgatattgaattatatattctatcctctttaactgttgattttgcagatattttcccattc 2472593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 4 - 485
Target Start/End: Original strand, 2471298 - 2471767
Alignment:
Q  4 gtgttagggctagagatcgaatacctccctttttatttagaactaaacttcttagtccttaactaactcacactaaccacaagtgttttaattgcattta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2471298 gtgttagggctagagatcgaatacctccctttttatttagaactaaacttcttagtccttaactaactcacaccaaccacaagtgttttaattgcattta 2471397  T
Q  104 gattattgtcagaagttagctgattttttaaagatttgtgtgttttagtgggtgaacgtattaaattgatacgttgagggaggaacgtctcagactcttg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  2471398 gattattgtcagaagttagctgattttttaaagatttgtgtgtttcagtgggtgaacgtattaaattcatacgttgagggaggaacgtctcagactctta 2471497  T
Q  204 gttatgctacaagtagtgaccagagaaattctattataggcactaacataaatgaatagtatttgaacacaagtacattaaagtcttttctttaataata 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||| |||||||||||||||    
T  2471498 gttatgctacaagtagtgaccagagaaattctattataggcacta------------agtatttgaacacaagtacattaaagttttttctttaataata 2471585  T
Q  304 aaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgatcatgaaaga 403  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  2471586 aaaatgaaattgataatataatgatttagtattttgagaagaaacatttttatgtgtgtgtgatcaaacattatacatttatatttgtgaccatggaaga 2471685  T
Q  404 atctctcgcagtgactatcggtctgaataataggtaaagaaatttagggttaattggttggtatacatcattgggctacaat 485  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2471686 atctctcgcagtgactatcggcctgggtaataggtaaagaaatttagggttaattgattggtatacatcattgggctacaat 2471767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 4e-77
Query Start/End: Original strand, 2496 - 2822
Target Start/End: Original strand, 2469510 - 2469831
Alignment:
Q  2496 ttgtataaatacaacactagaccctcaacaattttcatcaaaaacccacaaaa-cgatttaacattctgaaatttatagaaatcaggaaaatgggttcat 2594  Q
    |||| |||||||||||||||| || ||||||||||||||||| | | |||||| | ||||| ||||||||| |||||| |||| ||  ||||||||||||    
T  2469510 ttgtttaaatacaacactagagccccaacaattttcatcaaagaactacaaaaaccatttagcattctgaattttataaaaataagctaaatgggttcat 2469609  T
Q  2595 tttctctaatattgtgcatcttaggcttaatactcattgtgcatgttagtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaa 2694  Q
    ||||||||   |||| | | ||||| |||| ||||||| ||   | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2469610 tttctcta---ttgttcctgttaggtttaacactcattatg---ggtagtcacgttgcacatgcccaagactcaccagcagactacgtgaacgcccacaa 2469703  T
Q  2695 ccaagcaagatcggcagttgatacaaatattaaaattccaaatattatttgggataacaaagttgctgcttatgcacaaaattatgctaatcaacgcaag 2794  Q
      | |||||||| || ||| |||||||  ||||||||||||||||| ||||||| |||||||||||||||| |||| |||| ||||||||||||||||||    
T  2469704 taatgcaagatcagcggttcatacaaacgttaaaattccaaatattgtttgggacaacaaagttgctgcttttgcaaaaaactatgctaatcaacgcaag 2469803  T
Q  2795 gattgtcaattggtccactccggtggtg 2822  Q
    ||||||||| |||||||||| |||||||    
T  2469804 gattgtcaactggtccactctggtggtg 2469831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 147; E-Value: 2e-76
Query Start/End: Original strand, 1470 - 1719
Target Start/End: Complemental strand, 10164867 - 10164618
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaa-ggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataa 1568  Q
    ||||| |||||||||||| |||  ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    ||||||||||||||    
T  10164867 gggtgttgctaaccggtgcccctggggcactggttaaaggagcaataaattgatcattttcatttattttatctcaattaat----atgagaaataataa 10164772  T
Q  1569 accaactaattaaaattgtattcaatactctcttaaaggcacaac---tattatataattttgagagttgaccaatttatatcgtgtgaaatagaaacat 1665  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||    
T  10164771 accaattaattaaaattgtatttaatactctcttaaaggcacaacaactattatataattttgagagttgatcaatttatatcatgtgaaatagaaatat 10164672  T
Q  1666 aatattatttgaattcttcttgtaaatttttctcacagcagtattgttttttcc 1719  Q
    ||||||||||||||||||| ||||| |||| |||| | || |||||||||||||    
T  10164671 aatattatttgaattcttcgtgtaagttttcctcataacaatattgttttttcc 10164618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-52
Query Start/End: Original strand, 2497 - 2800
Target Start/End: Original strand, 2486045 - 2486342
Alignment:
Q  2497 tgtataaatacaacactagaccctcaacaa---ttttcatcaaaaacccacaaaacgatttaacattctgaaatttatagaaatcaggaaaatgggttca 2593  Q
    |||||||||||| ||||||| || ||||||   || |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||    
T  2486045 tgtataaatacatcactagagccccaacaacaattctcatcaaacacccacaaaaccatttagcattcagaaatttatagaaatcagcaaaatgggttca 2486144  T
Q  2594 ttttctctaatattgtgcatcttaggcttaatactcattgtgcatgttagtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccaca 2693  Q
    || |||| |   |||||| | ||||| |||| ||||||| ||   | |||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  2486145 ttctctcaa---ttgtgcttgttaggtttaacactcattatg---ggtagtcacgttgctcatgcccaagactcaccggcagactacgtgaacgcccaca 2486238  T
Q  2694 accaagcaagatcggcagttgatacaaatattaaaattccaaatattatttgggataacaaagttgctgcttatgcacaaaattatgctaatcaacgcaa 2793  Q
    || |||||||||| ||  |   ||| |  |||||||||||||| ||| ||||||||||| |  ||||||| | |||||| || |||||||||||||||||    
T  2486239 acaaagcaagatcagccat---taccaccattaaaattccaaacattgtttgggataacgatattgctgcatttgcacagaactatgctaatcaacgcaa 2486335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-48
Query Start/End: Original strand, 1467 - 1615
Target Start/End: Original strand, 2472762 - 2472905
Alignment:
Q  1467 aaagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataat 1566  Q
    |||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||    |||||||||||||||    
T  2472762 aaagggtgctactaatcggtgtcccc-gggcactggttaaggagcaataaactgatcagtttcatttattttatctcaatt----aatatgagaaataat 2472856  T
Q  1567 aaaccaactaattaaaattgtattcaatactctcttaaaggcacaacta 1615  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  2472857 aaaccaattaattaaaattgtattcaatactctcttaaaggaacaacta 2472905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 2e-48
Query Start/End: Original strand, 2641 - 2800
Target Start/End: Original strand, 2478513 - 2478672
Alignment:
Q  2641 tagtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaagatcggcagttgatacaaatattaaaattccaaatatt 2740  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||   |||||||||||||| |||    
T  2478513 tagtcacgttgcacaagcacaagactcaccagcagactacgtgaatgctcacaacaaagcaagatctgcagttgattcattcattaaaattccaaacatt 2478612  T
Q  2741 atttgggataacaaagttgctgcttatgcacaaaattatgctaatcaacgcaaggattgt 2800  Q
     ||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  2478613 gtttgggacaacgaagttgctgcttatgcacagaactatgctaatcaacgcaaggattgt 2478672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 1e-43
Query Start/End: Original strand, 2641 - 2800
Target Start/End: Original strand, 2483017 - 2483176
Alignment:
Q  2641 tagtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaagatcggcagttgatacaaatattaaaattccaaatatt 2740  Q
    ||||||||||||||| ||| ||||||| |||||| |||| ||||| || |||||| |||||||||||||||||||| ||  ||||||||||||||| |||    
T  2483017 tagtcacgttgcacaagccaaagactctccagcaaactatgtgaaggctcacaacaaagcaagatcggcagttgattcatttattaaaattccaaaaatt 2483116  T
Q  2741 atttgggataacaaagttgctgcttatgcacaaaattatgctaatcaacgcaaggattgt 2800  Q
     |||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||    
T  2483117 gtttgggataaaaaaattgctgcttatgcacagaactatgctaatcaacgcaaggattgt 2483176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 4e-37
Query Start/End: Original strand, 1596 - 1719
Target Start/End: Original strand, 11124490 - 11124616
Alignment:
Q  1596 ctctcttaaaggcacaa---ctattatataattttgagagttgaccaatttatatcgtgtgaaatagaaacataatattatttgaattcttcttgtaaat 1692  Q
    |||||||||||||||||   |||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  11124490 ctctcttaaaggcacaacaactattatataattttgagagttgatcaattaatatcctgtgaaatagaaatataatattatttgaattcttcttgtaaat 11124589  T
Q  1693 ttttctcacagcagtattgttttttcc 1719  Q
    ||| |||| | || |||||||||||||    
T  11124590 tttcctcataacaatattgttttttcc 11124616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 9e-35
Query Start/End: Original strand, 1471 - 1603
Target Start/End: Original strand, 11123435 - 11123564
Alignment:
Q  1471 ggtgctgctaaccggtgtccccagggcactggtt-aaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataaa 1569  Q
    |||| |||||||||||| ||||  ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||    
T  11123435 ggtgttgctaaccggtgcccccgaggcaccggttgaaggagcaataaattgatcagttctatttattttatctcaatt----aatatgagaaataataaa 11123530  T
Q  1570 ccaactaattaaaattgtattcaatactctctta 1603  Q
    |||| |||||||||||||||| ||||||||||||    
T  11123531 ccaattaattaaaattgtatttaatactctctta 11123564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 4e-31
Query Start/End: Original strand, 1639 - 1725
Target Start/End: Original strand, 2472905 - 2472991
Alignment:
Q  1639 aatttatatcgtgtgaaatagaaacataatattatttgaattcttcttgtaaatttttctcacagcagtattgttttttcctgtgta 1725  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  2472905 aatttatatcctgtgaaatagaaacataatattatttgaattcttcttgtaaatttttctcacaatagaattgttttttcctgtgta 2472991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 1752 - 1844
Target Start/End: Original strand, 2473020 - 2473112
Alignment:
Q  1752 catcccgtgaattttactcagcatattgtcttctttcannnnnnnaattaaaatttgttgaataattaaacaaagacaagatattttaaagtc 1844  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||    
T  2473020 catcccgtgaattttactcagcatattgtcttctttcatttttttaattaaaagttgttgaataattaaacaaagacaagatattttaaagtc 2473112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-18
Query Start/End: Original strand, 570 - 701
Target Start/End: Complemental strand, 39242859 - 39242728
Alignment:
Q  570 atacaaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatca-tcaaatcattttatcttta 668  Q
    ||||||||||||||||||| ||||||| || ||| || | ||||||  ||||||||||||||||||||||||||| |||| | || |  ||||| |||||    
T  39242859 atacaaataaaattatttgaacacacacaacaataaaaaaatttaattgataattaaattagtcacattattcaatatcactaaactatttttaccttta 39242760  T
Q  669 aaaataacatcaattgtgtgaatgtgtctaaac 701  Q
    ||||  ||||||||||||||| |||| ||||||    
T  39242759 aaaa-cacatcaattgtgtgagtgtgcctaaac 39242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 2725 - 2800
Target Start/End: Original strand, 2470761 - 2470836
Alignment:
Q  2725 taaaattccaaatattatttgggataacaaagttgctgcttatgcacaaaattatgctaatcaacgcaaggattgt 2800  Q
    |||||||||||||||| |||||||| | ||||||||||||| |||||| || ||||||||| ||||||||||||||    
T  2470761 taaaattccaaatattgtttgggatgaaaaagttgctgcttttgcacagaactatgctaataaacgcaaggattgt 2470836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 1759 - 1844
Target Start/End: Complemental strand, 10164570 - 10164484
Alignment:
Q  1759 tgaattttactcagcatattgtcttctttcannnnnnnaattaaaatttgttgaa-taattaaacaaagacaagatattttaaagtc 1844  Q
    ||||||||||||| |||||||||||||||||       |||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  10164570 tgaattttactcaacatattgtcttctttcatttttttaattaaaagttgttgaaataattaaataaagacaagatattttaaagtc 10164484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 574 - 671
Target Start/End: Original strand, 12129165 - 12129262
Alignment:
Q  574 aaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaaaa 671  Q
    ||||||||||||||||||||||| || |||||| | | |||||  |||| ||||||||||| || |||||||||||| ||| || |||||||||||||    
T  12129165 aaataaaattatttggacacacacaacaatgaaaaaaattaaataataaataaattagtcatatcattcaacatcattaaaccaatttatctttaaaa 12129262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 572 - 721
Target Start/End: Original strand, 36206432 - 36206587
Alignment:
Q  572 acaaataaaattatttggacacacataag------aatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatct 665  Q
    ||||||||||||||||||||||||| | |      |||||||| | ||||| ||||| |||||||||||||| |||||||||| | ||| || |||||||    
T  36206432 acaaataaaattatttggacacacacatgtacaacaatgaagaaaattaaaagataaataaattagtcacatcattcaacatctttaaaccaatttatct 36206531  T
Q  666 ttaaaa-ataacatcaattgtgtgaatgtgtctaaacctttttaaatttgagtttgt 721  Q
    |||||| | || || | |||||||| |||||| ||||||||||| ||||| ||||||    
T  36206532 ttaaaagaaaatat-atttgtgtgagtgtgtccaaacctttttacatttgtgtttgt 36206587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000007
Query Start/End: Original strand, 1756 - 1844
Target Start/End: Original strand, 11124650 - 11124744
Alignment:
Q  1756 ccgtgaattttactcagcatattgtcttctttcannnnnnn-----aattaaaatttgttgaa-taattaaacaaagacaagatattttaaagtc 1844  Q
    ||||||||||||||||||||||||||||||||||            |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  11124650 ccgtgaattttactcagcatattgtcttctttcattttttttttttaattaaaagttgttgaaataattaaacaaagacaagatattttaaagtc 11124744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 41401041 - 41400989
Alignment:
Q  284 aagtcttttctttaataataaaaatgaaattgataatataatgatttagtattt 337  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  41401041 aagtctttt-tttaataataaaaatgaaattgataatataatgatttaatattt 41400989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2643 - 2706
Target Start/End: Original strand, 2466342 - 2466405
Alignment:
Q  2643 gtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaagatc 2706  Q
    |||| |||||||||||||||||||||| ||||||||| ||||| || |||||| ||||||||||    
T  2466342 gtcatgttgcacatgcccaagactcacaagcagactatgtgaacgctcacaacgaagcaagatc 2466405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000004
Query Start/End: Original strand, 1470 - 1548
Target Start/End: Original strand, 32479404 - 32479482
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaatta 1548  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||  ||   || |||||||||||||| |||||    
T  32479404 gggtgctgctaaccggtgcctccagggcactggttaagaagcaataaatgaatagattacatttattttatcttaatta 32479482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 2643 - 2704
Target Start/End: Original strand, 2457718 - 2457779
Alignment:
Q  2643 gtcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaaga 2704  Q
    |||||||||||||||||||| |||||| ||||||||| |||||  |||||||| ||||||||    
T  2457718 gtcacgttgcacatgcccaaaactcacaagcagactatgtgaactcccacaacgaagcaaga 2457779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 405
Target Start/End: Complemental strand, 44667228 - 44667148
Alignment:
Q  323 aatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgatcatgaaagaat 405  Q
    |||||||||||||||| |||| | | ||||| |||||||||  | |||||||||| ||||| | |||||||||||||||||||    
T  44667228 aatgatttagtattttaagaaatgagattttgatgtgtgtg--accaaacactatgcatttgtgtttgtgatcatgaaagaat 44667148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 1476 - 1518
Target Start/End: Complemental strand, 26154678 - 26154636
Alignment:
Q  1476 tgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||| || ||||||||||||||||||||||||||||||||||    
T  26154678 tgctatccagtgtccccagggcactggttaaggagcaataaat 26154636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 1168 - 1205
Target Start/End: Original strand, 2478087 - 2478124
Alignment:
Q  1168 ttgaaatattcatgtacattttctgatattgaattatg 1205  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2478087 ttgaaatattcatgtacattttctgatattaaattatg 2478124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 2644 - 2704
Target Start/End: Original strand, 2462289 - 2462349
Alignment:
Q  2644 tcacgttgcacatgcccaagactcaccagcagactacgtgaatgcccacaaccaagcaaga 2704  Q
    ||||||||||||||||||| |||||| | ||||||| ||||| ||||||||| | ||||||    
T  2462289 tcacgttgcacatgcccaaaactcacaatcagactatgtgaacgcccacaacgacgcaaga 2462349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 8380983 - 8381071
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactat 377  Q
    |||| ||||||||| ||||  |||||||||  | |||||||||||||||  |||| | |||||||||| ||||| ||| ||||||||||    
T  8380983 ttttttttaataatgaaaaaaaaattgatatcaaaatgatttagtatttcaagaaatgacatttttatatgtgtatgaccaaacactat 8381071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 42460751 - 42460636
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatt 388  Q
    |||| ||||||| | ||||  |||||||||||| |||||||||||||||  |||| | ||| |||||| ||| |||||||||| ||||| ||||| | ||    
T  42460751 ttttttttaatattgaaaaaaaaattgataataaaatgatttagtatttcaagaaatgacacttttatatgt-tgtgatcaaatactattcatttgtgtt 42460653  T
Q  389 tgtgatcatgaaagaat 405  Q
    ||||  |||| ||||||    
T  42460652 tgtgcccatggaagaat 42460636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1974 - 2017
Target Start/End: Complemental strand, 10164311 - 10164268
Alignment:
Q  1974 ggtagataagtagaatctatgaatttattccttcttaaccggtg 2017  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  10164311 ggtagataaataaaatctatgaatttattgcttcttaaccggtg 10164268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1468 - 1507
Target Start/End: Complemental strand, 31438834 - 31438795
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaag 1507  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  31438834 aagggtcctgctaaccggtgtccccggggcactggttaag 31438795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 672
Target Start/End: Complemental strand, 42560571 - 42560469
Alignment:
Q  572 acaaataaaattatttgg--acacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaa 669  Q
    ||||||||||||||||||   |||||| || |||||||| | ||||| ||||| ||||| | |||||| |||||| ||||| ||| || ||||||||| |    
T  42560571 acaaataaaattatttgggcgcacacacaacaatgaagaaaattaaatgataaataaatcaatcacatcattcaaaatcattaaaccaatttatctttta 42560472  T
Q  670 aaa 672  Q
    |||    
T  42560471 aaa 42560469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1468 - 1518
Target Start/End: Original strand, 28277509 - 28277559
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||||| ||||||| |||| |||| |||||||||||||||| ||||||||    
T  28277509 aagggtgttgctaactggtgcccccggggcactggttaaggaacaataaat 28277559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1468 - 1518
Target Start/End: Complemental strand, 29293103 - 29293053
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||||| |||||||||||| |||| |||||| |||||||||| |||||||    
T  29293103 aagggtgttgctaaccggtgcccccggggcaccggttaaggagtaataaat 29293053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 7e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-91
Query Start/End: Original strand, 1470 - 1723
Target Start/End: Original strand, 50557678 - 50557923
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataaa 1569  Q
    ||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||    |||||||||||||||    
T  50557678 gggtgctgctaaccggtg--cccggggcactggataaggagcaataaattgatcaattctatttattttatctcaattaat----atgagaaataataaa 50557771  T
Q  1570 ccaactaattaaaattgtattcaatactctcttaaaggcacaactattatataattttgagagttgaccaatttatatcgtgtgaaatagaaacataata 1669  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  50557772 ccaattaattaaaattgtattcaatactct--taaaggcacaactattatataattttgagagttgaccaatttatatactgtaaaatagaaacctaata 50557869  T
Q  1670 ttatttgaattcttcttgtaaatttttctcacagcagtattgttttttcctgtg 1723  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  50557870 ttatttgaattcttcttgtaaattttcctcacaacagtattgttttttcctgtg 50557923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-20
Query Start/End: Original strand, 295 - 411
Target Start/End: Original strand, 12764400 - 12764516
Alignment:
Q  295 ttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgat 394  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||| || | |||| ||||||||||||||||| |||| ||| | ||||||| |||||||     
T  12764400 ttaataataaaaaagaaattgataataaaatgatttagtcttttcaggattaacttttttatgtgtgtgtgaccaaatacttttcatttatgtttgtgac 12764499  T
Q  395 catgaaagaatctctcg 411  Q
     ||| |||||| |||||    
T  12764500 tatgcaagaatgtctcg 12764516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 53585310 - 53585389
Alignment:
Q  294 tttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaaca 373  Q
    ||||| ||| |||| |||||| |||||| ||||||||| |||||| |||| | |||||||||||||||||||| ||||||    
T  53585310 tttaacaatgaaaaagaaattaataataaaatgatttaatattttaagaaatgacatttttatgtgtgtgtgaccaaaca 53585389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000007
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 34367250 - 34367162
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactat 377  Q
    |||| ||||||||| |||| ||||||||||||  |||||||||||||||  |||| | | |||||||||||| |||||  |||||||||    
T  34367250 ttttttttaataatgaaaaagaaattgataatgaaatgatttagtatttcaagaaatgatatttttatgtgtatgtgactaaacactat 34367162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 52161336 - 52161408
Alignment:
Q  294 tttaataataaaaatgaaattgataatataatgatttagtattttgaga-agtaacatttttatgtgtgtgtg 365  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||| | |  || |||||||||||||||||    
T  52161336 tttaataataaaaaagaaattgataataagatgatttagtattttgatacaaaaatatttttatgtgtgtgtg 52161408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 1467 - 1516
Target Start/End: Complemental strand, 23516630 - 23516581
Alignment:
Q  1467 aaagggtgctgctaaccggtgtccccagggcactggttaaggagcaataa 1516  Q
    |||||||| |||||||||||| |||| |||||||||||||||| ||||||    
T  23516630 aaagggtgttgctaaccggtgcccccggggcactggttaaggaacaataa 23516581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 1974 - 2019
Target Start/End: Original strand, 50558225 - 50558270
Alignment:
Q  1974 ggtagataagtagaatctatgaatttattccttcttaaccggtgcc 2019  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||    
T  50558225 ggtagataagtagaatttatgaatttattgcttcttaaccagtgcc 50558270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1812 - 1844
Target Start/End: Original strand, 50558020 - 50558052
Alignment:
Q  1812 aataattaaacaaagacaagatattttaaagtc 1844  Q
    |||||||||||||||||||||||||||||||||    
T  50558020 aataattaaacaaagacaagatattttaaagtc 50558052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 638
Target Start/End: Complemental strand, 340013 - 339943
Alignment:
Q  570 atacaaataaaattatttggacacacat--aagaatgaagacatttaaacgataattaaattagtcacatt 638  Q
    |||||||||||||||||||| |||||||  || ||| |||| | ||||| ||||| |||||||||||||||    
T  340013 atacaaataaaattatttgggcacacatacaacaataaagaaaattaaatgataaataaattagtcacatt 339943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 363
Target Start/End: Complemental strand, 39888837 - 39888700
Alignment:
Q  226 gagaaattctattataggcactaacataaatgaa-tagtatttgaacacaagtacattaaagtcttttctttaataataaaaatgaaattgataatataa 324  Q
    |||||||||| |||||| ||| || | ||||||| |||  ||||  ||||| |||||||||   |||| |||| |||| |||| ||||||||||||| ||    
T  39888837 gagaaattcttttatagtcacaaatacaaatgaaatagagtttgggcacaaatacattaaaagatttttttta-taatgaaaaagaaattgataataaaa 39888739  T
Q  325 tgatttagtattttgagaagtaacatttttatgtgtgtg 363  Q
    |||||||||||||  | || |||| ||||||| ||||||    
T  39888738 tgatttagtatttcaaaaaataacttttttatatgtgtg 39888700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1752 - 1786
Target Start/End: Original strand, 50557949 - 50557983
Alignment:
Q  1752 catcccgtgaattttactcagcatattgtcttctt 1786  Q
    ||||||||||||||||||||||||||||| |||||    
T  50557949 catcccgtgaattttactcagcatattgttttctt 50557983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 4e-74; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-74
Query Start/End: Original strand, 1514 - 1717
Target Start/End: Complemental strand, 32518725 - 32518526
Alignment:
Q  1514 taaattgatcagttccatttattttatctcaattaattaatatgagaaataataaaccaactaattaaaattgtattcaatactctcttaaaggcacaac 1613  Q
    |||||||||||||| ||||||||||||||||||||||    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32518725 taaattgatcagtttcatttattttatctcaattaat----atgagaaataataaacgaactaattaaaattgtattcaatactctcttaaaggcacaac 32518630  T
Q  1614 tattatataattttgagagttgaccaatttatatcgtgtgaaatagaaacataatattatttgaattcttcttgtaaatttttctcacagcagtattgtt 1713  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| | |||||| ||| || || |||||||    
T  32518629 tattatataattttgagagttgaccaatttatatcctgtgaaatagaaacataatattatttaatttcttcttctgaattttcctcgcaacattattgtt 32518530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-34
Query Start/End: Original strand, 1607 - 1723
Target Start/End: Complemental strand, 38858738 - 38858616
Alignment:
Q  1607 gcacaactattatataattttgagagttgaccaatttatatcgtgtgaaatagaaacataatattatttgaattcttcttgtaaattt------ttctca 1700  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||      | ||||    
T  38858738 gcacaactattatataattttgagagttgaccaatttatatcctgtaaaatagaaacataatattattttaattcttcttataaattttcctcatcctca 38858639  T
Q  1701 cagcagtattgttttttcctgtg 1723  Q
    || ||||||||||||||||||||    
T  38858638 caacagtattgttttttcctgtg 38858616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-30
Query Start/End: Original strand, 289 - 389
Target Start/End: Original strand, 35352724 - 35352824
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatt 388  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||||||    ||||||||||||| |||||||||||||||||||||||||||||    
T  35352724 ttttttttaataataaaaatgaaattgataatatattgatttagtactttgagggaaaacatttttatgtatgtgtgatcaaacactatacatttatatt 35352823  T
Q  389 t 389  Q
    |    
T  35352824 t 35352824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-27
Query Start/End: Original strand, 226 - 389
Target Start/End: Complemental strand, 10803620 - 10803457
Alignment:
Q  226 gagaaattctattataggcactaacataaatgaatagtatttgaacacaagtacattaaagtcttttctttaataataaaaatgaaattgataatataat 325  Q
    ||||||||||| ||| ||||| |||||||||||||||| |||| |||||  ||||| ||| |  ||| ||||||||||||||| |||||||||||| |||    
T  10803620 gagaaattctaatatgggcacaaacataaatgaatagtgtttggacacatatacatcaaatttatttttttaataataaaaataaaattgataatacaat 10803521  T
Q  326 gatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatattt 389  Q
    ||||||||||||||| ||    || |||||| ||| ||||| |||| ||||| |||||||||||    
T  10803520 gatttagtattttgaaaaaatgcacttttatatgtatgtgaccaaaaactattcatttatattt 10803457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-21
Query Start/End: Original strand, 1759 - 1844
Target Start/End: Complemental strand, 38858583 - 38858497
Alignment:
Q  1759 tgaattttactcagcatattgtcttctttcannnnnnnaattaaaatttgttgaa-taattaaacaaagacaagatattttaaagtc 1844  Q
    |||||||||||||||||||||||||||||||       |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  38858583 tgaattttactcagcatattgtcttctttcatttttttaattaaaagttgttgaaataattaaacaaagacaagatattttaaagtc 38858497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-20
Query Start/End: Original strand, 1495 - 1592
Target Start/End: Original strand, 50524554 - 50524647
Alignment:
Q  1495 ggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataaaccaactaattaaaattgtattca 1592  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    |||||||||||  |||| ||||| || ||||||||||||||||||    
T  50524554 ggcactggttaaggagcaataaattgtttagttccatttattttatctc----aattaatatgaagaatagtaaactaattaattaaaattgtattca 50524647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 7026512 - 7026622
Alignment:
Q  233 tctattataggcactaacataaatgaatagtatttgaacacaagtacattaa-ag-tcttttctttaataataaaaatgaaattgataatataatgattt 330  Q
    |||||||||| ||| |||||||||||||||| |||| |||||  | |||||| || | |||| |||||||||||||| ||||||||||||| ||||||||    
T  7026512 tctattatagtcacaaacataaatgaatagtgtttggacaca--ttcattaatagattttttttttaataataaaaaagaaattgataataaaatgattt 7026609  T
Q  331 agtattttgagaa 343  Q
    | |||||||||||    
T  7026610 attattttgagaa 7026622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000004
Query Start/End: Original strand, 1974 - 2020
Target Start/End: Complemental strand, 38858325 - 38858279
Alignment:
Q  1974 ggtagataagtagaatctatgaatttattccttcttaaccggtgccc 2020  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  38858325 ggtagataagtagaatctatgaatttattgcttcttaaccagtgccc 38858279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 625 - 700
Target Start/End: Complemental strand, 39112781 - 39112706
Alignment:
Q  625 aaattagtcacattattcaacatcatcaaatcattttatctttaaaaataacatcaattgtgtgaatgtgtctaaa 700  Q
    ||||||||||||| |||||||||||| ||| || |||| ||||||||| || | ||||||||||| |||| |||||    
T  39112781 aaattagtcacatcattcaacatcattaaaccaatttacctttaaaaaaaaaagcaattgtgtgagtgtgcctaaa 39112706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1468 - 1507
Target Start/End: Complemental strand, 29657959 - 29657920
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaag 1507  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  29657959 aagggtcctgctaaccggtgcccccagggcactggttaag 29657920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1469 - 1507
Target Start/End: Original strand, 12072061 - 12072099
Alignment:
Q  1469 agggtgctgctaaccggtgtccccagggcactggttaag 1507  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  12072061 agggtgctgctaaccggtgcccccggggcactggttaag 12072099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1468 - 1518
Target Start/End: Original strand, 12377211 - 12377261
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||||| |||||||||||| | || || ||||||||||||||||||||||    
T  12377211 aagggtgttgctaaccggtgcctccgggacactggttaaggagcaataaat 12377261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1468 - 1518
Target Start/End: Complemental strand, 38452544 - 38452494
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||||| ||||||||||||||||  |  ||||||||||||||||||||||    
T  38452544 aagggtgttgctaaccggtgtccctggaacactggttaaggagcaataaat 38452494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-68; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-68
Query Start/End: Original strand, 1471 - 1716
Target Start/End: Complemental strand, 46466063 - 46465826
Alignment:
Q  1471 ggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataaac 1570  Q
    |||||||||||| ||||  || |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    |||| |||||||||||    
T  46466063 ggtgctgctaacgggtg--ccgagggcactggttaaagagcaataaattgttcagttccatttattttatctcaattaat----atgaaaaataataaac 46465970  T
Q  1571 caactaattaaaattgtattcaatactctctt-aaaggcacaactattatataattttgagagttgaccaatttatatcgtgtgaaatagaaacataata 1669  Q
    ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| ||||||    
T  46465969 caattaattaaaattgtattcaatactctcttaaaagacacaactattatataattttaagaattgatcaatttatatcgtgtgaaataaaaatataata 46465870  T
Q  1670 ttatttgaattcttcttgtaaatttttctcacagcagtattgttttt 1716  Q
    ||||||   |  ||||||| ||||||||||||| |||||||||||||    
T  46465869 ttattt---tatttcttgtgaatttttctcacaacagtattgttttt 46465826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-64
Query Start/End: Original strand, 1469 - 1648
Target Start/End: Original strand, 21869399 - 21869574
Alignment:
Q  1469 agggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataa 1568  Q
    |||||||||||||| |||| | || || |||||||||||||||||||||||| |||||| |||||||||||||||||||    |||||||||||||||||    
T  21869399 agggtgctgctaactggtgcctccgggtcactggttaaggagcaataaattgctcagtttcatttattttatctcaatt----aatatgagaaataataa 21869494  T
Q  1569 accaactaattaaaattgtattcaatactctcttaaaggcacaactattatataattttgagagttgaccaatttatatc 1648  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21869495 accaactaattcaaattgtattcaatattctcttaaaggcacaactattatataattttgagagttgaccaatttatatc 21869574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 1976 - 2041
Target Start/End: Original strand, 21869916 - 21869981
Alignment:
Q  1976 tagataagtagaatctatgaatttattccttcttaaccggtgcccgggagcattggataacattac 2041  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  || ||| |||||||||||||    
T  21869916 tagataagtagaatctatgaatttattgcttcttaaccggtgcctcggggcactggataacattac 21869981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-16
Query Start/End: Original strand, 1976 - 2041
Target Start/End: Original strand, 21870675 - 21870739
Alignment:
Q  1976 tagataagtagaatctatgaatttattccttcttaaccggtgcccgggagcattggataacattac 2041  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||    
T  21870675 tagataagtagaatctatgaatttattgcttcttaaccagtgcccggg-gcactggataacattac 21870739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 1467 - 1518
Target Start/End: Complemental strand, 36786097 - 36786046
Alignment:
Q  1467 aaagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  36786097 aaagggtgctgctaaccggtgcccccggggcactggttaagaagcaataaat 36786046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 1974 - 2041
Target Start/End: Complemental strand, 46465564 - 46465497
Alignment:
Q  1974 ggtagataagtagaatctatgaatttattccttcttaaccggtgcccgggagcattggataacattac 2041  Q
    |||| ||||||||||||||| |||||||| |||||||||| |||||| ||||||  ||||||||||||    
T  46465564 ggtaaataagtagaatctataaatttattgcttcttaacccgtgccccggagcaccggataacattac 46465497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 410
Target Start/End: Complemental strand, 44258424 - 44258315
Alignment:
Q  298 ataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgatcat 397  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||    ||||||||  ||||||| || |||||||||  | ||||||||||||| ||    
T  44258424 ataacaaaaatgaaattgataatataatgttttattattttgagaaaatgcattttta--tgtgtgtaattaaacactattta-ttatatttgtgattat 44258328  T
Q  398 gaaagaatctctc 410  Q
    | |||||| ||||    
T  44258327 ggaagaatgtctc 44258315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 1752 - 1789
Target Start/End: Original strand, 21869643 - 21869680
Alignment:
Q  1752 catcccgtgaattttactcagcatattgtcttctttca 1789  Q
    |||||||||||||||||| |||||||||||||||||||    
T  21869643 catcccgtgaattttacttagcatattgtcttctttca 21869680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 1494 - 1549
Target Start/End: Complemental strand, 41539984 - 41539929
Alignment:
Q  1494 gggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaa 1549  Q
    ||||||||||||||||||| |||||||||   ||||||||||||||  ||||||||    
T  41539984 gggcactggttaaggagcattaaattgatggattccatttattttacttcaattaa 41539929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1467 - 1549
Target Start/End: Complemental strand, 22316875 - 22316794
Alignment:
Q  1467 aaagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaa 1549  Q
    |||||||| | ||||||||||||||   | ||| ||||||||||||||||| ||| || ||||||||||||||| | ||||||    
T  22316875 aaagggtgttcctaaccggtgtcccggagacaccggttaaggagcaataaa-tgaacaattccatttattttattttaattaa 22316794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1470 - 1516
Target Start/End: Complemental strand, 31320420 - 31320374
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataa 1516  Q
    ||||| |||||||||||| |||| |||||||||||||||| ||||||    
T  31320420 gggtgttgctaaccggtgcccccggggcactggttaaggaacaataa 31320374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1470 - 1516
Target Start/End: Complemental strand, 35791690 - 35791644
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataa 1516  Q
    ||||| |||||||||||| |||| |||||||||||||||| ||||||    
T  35791690 gggtgttgctaaccggtgcccccggggcactggttaaggaacaataa 35791644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1476 - 1518
Target Start/End: Original strand, 36785488 - 36785530
Alignment:
Q  1476 tgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    ||||| |||||| |||| |||||||||||||||||||||||||    
T  36785488 tgctatccggtgcccccggggcactggttaaggagcaataaat 36785530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-41; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-41
Query Start/End: Original strand, 1467 - 1644
Target Start/End: Complemental strand, 8316446 - 8316264
Alignment:
Q  1467 aaagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataat 1566  Q
    |||||||||||||||||| || |||| | ||||||||||||||||||||||||||| |||| |||||||||||||    |||||||||||||||||||||    
T  8316446 aaagggtgctgctaaccgatg-ccccggagcactggttaaggagcaataaattgataagtttcatttattttatc----ttaattaatatgagaaataat 8316352  T
Q  1567 aaaccaactaattaaaa----------ttgtattcaatactctcttaaaggcacaactattatataattttgagagttgaccaattta 1644  Q
    |||||||||||||||||          || |||||||||||||| |||| |||||| ||||||||||||||||||||||| |||||||    
T  8316351 aaaccaactaattaaaattaacataagttctattcaatactctcataaaagcacaattattatataattttgagagttgatcaattta 8316264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 392
Target Start/End: Original strand, 28237939 - 28238021
Alignment:
Q  310 aaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtg 392  Q
    |||||||||||| |||||||||| ||||||||||  ||| ||||||||| || |||| |||| ||||| ||||||||||||||    
T  28237939 aaattgataataaaatgatttagcattttgagaaaaaacttttttatgtatgagtgaccaaatactattcatttatatttgtg 28238021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 13200231 - 13200127
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtatttt-gagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatat 387  Q
    |||| ||||||||||| || ||||||||||||| ||||||||||||||||  | || | |||| ||||||||||||||| ||||||| || ||||| | |    
T  13200231 ttttttttaataataagaaagaaattgataataaaatgatttagtattttaaaaaaatgacatatttatgtgtgtgtgaccaaacacaattcatttgtgt 13200132  T
Q  388 ttgtg 392  Q
    |||||    
T  13200131 ttgtg 13200127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 29267291 - 29267203
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactat 377  Q
    ||||||| |||||| |||| ||||||||||||  |||||||||||||||| | || | ||| |||||||||| ||||| ||||||||||    
T  29267291 ttttcttaaataatgaaaaagaaattgataatgaaatgatttagtattttaaaaaatgacacttttatgtgtatgtgaccaaacactat 29267203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 12434499 - 12434602
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatt 388  Q
    |||| |||||||||||||| ||||||||||||| ||| ||||||| | |||||||  ||  |||| ||||||||||||  ||| ||| | ||||||||||    
T  12434499 ttttttttaataataaaaaagaaattgataataaaataatttagtttgttgagaaaaaagtttttgatgtgtgtgtgactaaatactgttcatttatatt 12434598  T
Q  389 tgtg 392  Q
    ||||    
T  12434599 tgtg 12434602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 12914305 - 12914385
Alignment:
Q  323 aatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgatcatgaaagaat 405  Q
    |||||||||||||||| |||| ||| |||||||| ||||  ||||||||||||||  |||||||||||| |  ||||||||||    
T  12914305 aatgatttagtatttttagaaataatatttttatatgtg--tgatcaaacactatttatttatatttgtaactatgaaagaat 12914385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 29104715 - 29104782
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttat 356  Q
    ||||||| |||||| |||| ||||||||||||  |||||||||||||||| |||| | ||| ||||||    
T  29104715 ttttcttaaataatgaaaaagaaattgataatgaaatgatttagtattttaagaaatgacacttttat 29104782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1470 - 1516
Target Start/End: Complemental strand, 1919659 - 1919613
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataa 1516  Q
    ||||| |||||||||||| |||| |||||||||||||||| ||||||    
T  1919659 gggtgttgctaaccggtgcccccggggcactggttaaggaacaataa 1919613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 81; Significance: 4e-37; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 81; E-Value: 4e-37
Query Start/End: Original strand, 278 - 410
Target Start/End: Complemental strand, 8766 - 8634
Alignment:
Q  278 acattaaagtcttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactat 377  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||| | ||||| ||||    
T  8766 acatcaaagtcttttttttaataataaaaatgaaattgataatataatgatttagtattttgagaaaaattatttttatgtgtgtgtaaccaaaccctat 8667  T
Q  378 acatttatatttgtgatcatgaaagaatctctc 410  Q
     |||||||||||||||| ||| |||||| ||||    
T  8666 tcatttatatttgtgattatggaagaatgtctc 8634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-37
Query Start/End: Original strand, 278 - 410
Target Start/End: Original strand, 44091144 - 44091276
Alignment:
Q  278 acattaaagtcttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactat 377  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||| | ||||| ||||    
T  44091144 acatcaaagtcttttttttaataataaaaatgaaattgataatataatgatttagtattttgagaaaaattatttttatgtgtgtgtaaccaaaccctat 44091243  T
Q  378 acatttatatttgtgatcatgaaagaatctctc 410  Q
     |||||||||||||||| ||| |||||| ||||    
T  44091244 tcatttatatttgtgattatggaagaatgtctc 44091276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-18
Query Start/End: Original strand, 571 - 673
Target Start/End: Original strand, 5860245 - 5860349
Alignment:
Q  571 tacaaataaaattatttggaca--cacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatcttta 668  Q
    |||||||||||||||||| |||  |||| || |||||||| ||||||| |||||||||| || |||| | ||| |||||||| |||||||||||||||||    
T  5860245 tacaaataaaattatttgaacatacacacaacaatgaagaaatttaaatgataattaaactaatcacgtcatttaacatcattaaatcattttatcttta 5860344  T
Q  669 aaaat 673  Q
    |||||    
T  5860345 aaaat 5860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 13776378 - 13776461
Alignment:
Q  280 attaaagtcttttctttaataataaaaatgaaattgataatataatgatttagtatttt-gagaagtaacatttttatgtgtgtg 363  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||||| | |||| ||||| |  ||||||||||||||||    
T  13776378 attaaagccatttttttaataataaaaatgaaattgataatataatgatttaattttttggagaaat-gcatttttatgtgtgtg 13776461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000007
Query Start/End: Original strand, 1470 - 1518
Target Start/End: Complemental strand, 15451255 - 15451207
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    |||||||||||||||||| | || |||||||||||||||||||||||||    
T  15451255 gggtgctgctaaccggtgcctccggggcactggttaaggagcaataaat 15451207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 1468 - 1518
Target Start/End: Complemental strand, 45185091 - 45185041
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    |||||||||||||||||||| |||| |||||||||||||| | ||||||||    
T  45185091 aagggtgctgctaaccggtgcccccggggcactggttaagaaacaataaat 45185041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 694
Target Start/End: Original strand, 1890892 - 1891004
Alignment:
Q  570 atacaaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaa 669  Q
    |||||||  ||||||||||| |||||| |  |||||||| ||||||| ||||||||||||| |||||| |||||||          ||||||||||||||    
T  1890892 atacaaactaaattatttgggcacacacac-aatgaagaaatttaaatgataattaaattaatcacatcattcaac----------cattttatctttaa 1890980  T
Q  670 aaataacatcaattgtgtgaatgtg 694  Q
    ||| || ||||||||||||||||||    
T  1890981 aaa-aatatcaattgtgtgaatgtg 1891004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 672
Target Start/End: Complemental strand, 16602713 - 16602609
Alignment:
Q  570 atacaaataaaattatttgg--acacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatcttt 667  Q
    ||||||||||||||||||||  ||||| |||| ||| |||| | ||||| ||||| ||||||| ||| || |||||| ||||| ||| || ||||||||     
T  16602713 atacaaataaaattatttgggcacacagataacaataaagaaaattaaatgataaataaattaatcatatcattcaatatcattaaaccaatttatctta 16602614  T
Q  668 aaaaa 672  Q
    |||||    
T  16602613 aaaaa 16602609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 675
Target Start/End: Original strand, 21525084 - 21525194
Alignment:
Q  570 atacaaataaaattatttggaca--cacataagaatgaagacatttaaacgataattaaattagtcacattattcaac---atcatcaaatcattttatc 664  Q
    ||||||| |||||||||| || |  |||| || |||||||| |  |||| ||||| ||||||||||| ||||||||||   ||||| |||| ||||||||    
T  21525084 atacaaacaaaattattttgatatacacacaataatgaagaaaactaaaagataaataaattagtcaaattattcaacaatatcattaaattattttatc 21525183  T
Q  665 tttaaaaataa 675  Q
    |||||||||||    
T  21525184 tttaaaaataa 21525194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-33
Query Start/End: Original strand, 1468 - 1622
Target Start/End: Original strand, 24663199 - 24663360
Alignment:
Q  1468 aagggtgctgctaaccggtgtccccagggcactggttaa-ggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataat 1566  Q
    ||||||| |||||||||||| |||  ||||||||||||| |||||||||||||||||| || |||||||||||||||    ||||||||||||| |||||    
T  24663199 aagggtgttgctaaccggtgcccctggggcactggttaaaggagcaataaattgatcattttcatttattttatctc----aattaatatgagagataat 24663294  T
Q  1567 aaaccaactaattaaaa----------ttgtattcaatactctcttaaaggcacaactattatata 1622  Q
    ||| |||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  24663295 aaatcaactaattaaaattaacataagttgtattcaatactctcttaaaggcacaactattatata 24663360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 1471 - 1519
Target Start/End: Complemental strand, 8924920 - 8924872
Alignment:
Q  1471 ggtgctgctaaccggtgtccccagggcactggttaaggagcaataaatt 1519  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8924920 ggtgctgttaaccggtgtccccagagcactggttaaggagcaataaatt 8924872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 1471 - 1519
Target Start/End: Complemental strand, 8935177 - 8935129
Alignment:
Q  1471 ggtgctgctaaccggtgtccccagggcactggttaaggagcaataaatt 1519  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8935177 ggtgctgttaaccggtgtccccagagcactggttaaggagcaataaatt 8935129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.0000000000003
Query Start/End: Original strand, 248 - 392
Target Start/End: Complemental strand, 34493108 - 34492964
Alignment:
Q  248 aacataaatgaatagtatttgaacacaagtacattaaagtcttttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaa 347  Q
    ||||||||||||||||||||| |||||  | ||| |||   |||| | ||||||||||||  || ||  ||||| ||| ||||| |||||||| ||  ||    
T  34493108 aacataaatgaatagtatttgtacacacatgcatcaaaagattttttctaataataaaaagaaattttttaataaaataatttaatattttgaaaaaaaa 34493009  T
Q  348 catttttatgtgtgtgtgatcaaacactatacatttatatttgtg 392  Q
    | ||||||||| ||||||| |||| ||||| ||||||||||||||    
T  34493008 cttttttatgtatgtgtgaccaaatactattcatttatatttgtg 34492964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000004
Query Start/End: Original strand, 1621 - 1719
Target Start/End: Original strand, 24663635 - 24663733
Alignment:
Q  1621 taattttgagagttgaccaatttatatcgtgtgaaatagaaacataatattatttgaattcttcttgtaaatttttctcacagcagtattgttttttcc 1719  Q
    ||||||||| |||||||||||||||||| | |||| |||||||||||||||   ||| |||||||| | |||||| |||||| | |||||  |||||||    
T  24663635 taattttgaaagttgaccaatttatatcctatgaagtagaaacataatatttagtgatttcttcttttgaattttcctcacaaccgtatttctttttcc 24663733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 675
Target Start/End: Original strand, 30453633 - 30453738
Alignment:
Q  570 atacaaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaa 669  Q
    ||||||| |||||||||| | |||||| || |||||| | |  |||| ||||| ||||||||||| || |||||| ||||| |||  |||||||||||||    
T  30453633 atacaaacaaaattatttaggcacacacaataatgaaaaaaactaaaagataaataaattagtcaaatcattcaatatcattaaactattttatctttaa 30453732  T
Q  670 aaataa 675  Q
    ||||||    
T  30453733 aaataa 30453738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 1467 - 1518
Target Start/End: Original strand, 1603994 - 1604045
Alignment:
Q  1467 aaagggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    |||||||| |||||||||||| |||| |||||||||||||| ||||||||||    
T  1603994 aaagggtgttgctaaccggtgcccccggggcactggttaagaagcaataaat 1604045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 10106113 - 10106071
Alignment:
Q  289 ttttctttaataataaaaatgaaattgataatataatgattta 331  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  10106113 ttttttttaataataaaaatgaaattgatagtataatgattta 10106071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 343
Target Start/End: Complemental strand, 7991930 - 7991834
Alignment:
Q  248 aacataaatgaatagtatttgaacacaagtacattaaagtcttttctt-taataataaaaatgaaattgataatataatgatttagtattttgagaa 343  Q
    |||||||||||||||| |||| |||||   |||| |||   |||| || ||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  7991930 aacataaatgaatagtgtttggacacacaaacatcaaaagatttttttctaataataaaaagcaaattgttaataaaatgatttagtattttgagaa 7991834  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1479 - 1519
Target Start/End: Complemental strand, 8939875 - 8939835
Alignment:
Q  1479 taaccggtgtccccagggcactggttaaggagcaataaatt 1519  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  8939875 taaccggtgtccccagaacactggttaaggagcaataaatt 8939835  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1469 - 1507
Target Start/End: Complemental strand, 8701381 - 8701343
Alignment:
Q  1469 agggtgctgctaaccggtgtccccagggcactggttaag 1507  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  8701381 agggtgctgctaaccggtgcccccggggcactggttaag 8701343  T

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Target: chr4 (Bit Score: 60; Significance: 1e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 24679371 - 24679260
Alignment:
Q  299 taataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgatcatg 398  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||| | ||| |||||||  ||||| |||||    
T  24679371 taataaaaataagattgataatataatgatttagtattttgaaaaaaaatatttttatgtgtgtgtgatcaaatattattcatttatggttgtgctcatg 24679272  T
Q  399 aaagaatctctc 410  Q
    ||||||| ||||    
T  24679271 aaagaatgtctc 24679260  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 572 - 671
Target Start/End: Complemental strand, 32026213 - 32026114
Alignment:
Q  572 acaaataaaattatttggacacacataagaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaaaa 671  Q
    ||||||||||| |||||| |||||| || |||||||| | ||||| ||||| ||||| |||||| | |||||||||||| ||| || |||||||||||||    
T  32026213 acaaataaaataatttgggcacacacaacaatgaagaaaattaaatgataaataaatcagtcacgtcattcaacatcattaaaccaatttatctttaaaa 32026114  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 45683808 - 45683898
Alignment:
Q  291 ttctttaataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacattt 383  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||||  | || | ||| |||||  ||||||||  ||||||||||||||||    
T  45683808 ttctttaataataaaaaagaaattgattataaaatgatttagtatttcaaaaaatgacactttta--tgtgtgtgcccaaacactatacattt 45683898  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000007
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 42508061 - 42507953
Alignment:
Q  230 aattctattataggcactaacataaatgaatagtatttgaacacaagtacattaaagtcttttctttaataataaaaatgaaattgataatataatgatt 329  Q
    |||||| |||||| |||||||||||||||| ||| |||| ||| |   |||||||| |  ||| | ||||||| |||| ||||||||||||| ||| |||    
T  42508061 aattcttttatagtcactaacataaatgaacagtgtttggacatacacacattaaaattctttttctaataatgaaaaagaaattgataataaaataatt 42507962  T
Q  330 tagtatttt 338  Q
    |||||||||    
T  42507961 tagtatttt 42507953  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000003
Query Start/End: Original strand, 1501 - 1585
Target Start/End: Complemental strand, 23038102 - 23038022
Alignment:
Q  1501 ggttaaggagcaataaattgatcagttccatttattttatctcaattaattaatatgagaaataataaaccaactaattaaaatt 1585  Q
    ||||||||||||||||||| ||  |||||| |||||| | ||||||||||    ||||||||||||||  |||||||||||||||    
T  23038102 ggttaaggagcaataaattaataggttccacttatttcacctcaattaat----atgagaaataataagtcaactaattaaaatt 23038022  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 10334541 - 10334599
Alignment:
Q  612 ttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaaa 670  Q
    ||||| ||||||||||||| ||| |||||||||||||||| || ||||| |||||||||    
T  10334541 ttaaatgataattaaattaatcatattattcaacatcatctaaccatttaatctttaaa 10334599  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 1979 - 2041
Target Start/End: Original strand, 23038068 - 23038130
Alignment:
Q  1979 ataagtagaatctatgaatttattccttcttaaccggtgcccgggagcattggataacattac 2041  Q
    |||||| ||| |||| |||||||| || |||||||||| ||||||||||||||||| ||||||    
T  23038068 ataagtggaacctattaatttattgctccttaaccggtacccgggagcattggatagcattac 23038130  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 2412622 - 2412674
Alignment:
Q  358 tgtgtgtgatcaaacactatacatttatatttgtgatcatgaaagaatctctc 410  Q
    |||||||| |||||||||||||||||||||||||||  || ||||||| ||||    
T  2412622 tgtgtgtgttcaaacactatacatttatatttgtgactataaaagaatttctc 2412674  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.00000002
Query Start/End: Original strand, 1470 - 1518
Target Start/End: Complemental strand, 10426103 - 10426055
Alignment:
Q  1470 gggtgctgctaaccggtgtccccagggcactggttaaggagcaataaat 1518  Q
    |||||||||||||||||| |||| |||||||||||||| || |||||||    
T  10426103 gggtgctgctaaccggtgcccccggggcactggttaagaagtaataaat 10426055  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 672
Target Start/End: Original strand, 10383436 - 10383537
Alignment:
Q  572 acaaataaaattatttggacacacata--agaatgaagacatttaaacgataattaaattagtcacattattcaacatcatcaaatcattttatctttaa 669  Q
    |||||||||||||| ||| ||||||||  | |||||| | | ||||| ||||| ||||||| |||| | |||||| ||||| |||||| |||||||||||    
T  10383436 acaaataaaattatctgggcacacatacaacaatgaaaa-acttaaatgataaataaattaatcacgtcattcaatatcattaaatcaatttatctttaa 10383534  T
Q  670 aaa 672  Q
    |||    
T  10383535 aaa 10383537  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 40159576 - 40159479
Alignment:
Q  296 taataataaaaatgaaattgataatataatgatttagtattttgagaagtaacatttttatgtgtgtgtgatcaaacactatacatttatatttgtgat 394  Q
    ||||||| ||||  |||||||||||| |||||||| |||||||||||| |  ||||||||||| ||| | | |||| ||||| ||||||| ||| ||||    
T  40159576 taataattaaaaaaaaattgataatagaatgatttggtattttgagaaat-gcatttttatgtatgtataaccaaaaactattcatttatgtttatgat 40159479  T

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Target: scaffold0009 (Bit Score: 53; Significance: 2e-20; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 2e-20
Query Start/End: Original strand, 1584 - 1648
Target Start/End: Original strand, 4741 - 4805
Alignment:
Q  1584 ttgtattcaatactctcttaaaggcacaactattatataattttgagagttgaccaatttatatc 1648  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  4741 ttgtattcaatactctcataaaggcacaattattatataattttgaaagttgaccaatttatatc 4805  T

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Target: scaffold0009; HSP #2
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1584 - 1647
Target Start/End: Original strand, 4131 - 4194
Alignment:
Q  1584 ttgtattcaatactctcttaaaggcacaactattatataattttgagagttgaccaatttatat 1647  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||    
T  4131 ttgtattcaatactctcataaagacacaattattatataattttgaaagttgaccaatttatat 4194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 1584 - 1647
Target Start/End: Complemental strand, 4616 - 4553
Alignment:
Q  1584 ttgtattcaatactctcttaaaggcacaactattatataattttgagagttgaccaatttatat 1647  Q
    |||| ||| |||||||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  4616 ttgttttctatactctcataaaggcacaattattatataattttgaaagttgaccaatttatat 4553  T

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Target: scaffold0360 (Bit Score: 40; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 673
Target Start/End: Original strand, 14428 - 14483
Alignment:
Q  618 gataattaaattagtcacattattcaacatcatcaaatcattttatctttaaaaat 673  Q
    ||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||    
T  14428 gataattaaattaatcacatcattcaacatcattaaattattttatctttaaaaat 14483  T

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