View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3316_low_11 (Length: 248)
Name: NF3316_low_11
Description: NF3316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3316_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15398444 - 15398681
Alignment:
| Q |
1 |
gtgagggctagtagggattcaagattctacaagaaaatagttgttgattatatatatgcatttcttaggaagatatgcagagaaaatagtgtgatattca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15398444 |
gtgagggctagtagaaattcaagattctacaagaaaatagatgttgattatatatatgcatttcttaggaaaatatgcagagaaaatagtgtgatattca |
15398543 |
T |
|
| Q |
101 |
atattcctcatgagagtctcttaaatgttggtcaagttttctatgtatagtcccttctttactttgtataaagatcaataagattatttattattttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15398544 |
atattcctcatgagagtctcttaaatgttggtcaagttttctatgtatagtcccttctttactttgtataaagatcaataagattatttattattttgtg |
15398643 |
T |
|
| Q |
201 |
cctgccattttgtgcagagttccagatttttagatatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15398644 |
cctgccattttgtgcagagttccagatttttagatatt |
15398681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15389842 - 15390079
Alignment:
| Q |
1 |
gtgagggctagtagggattcaagattctacaagaaaatagttgttgattatatatatgcatttcttaggaagatatgcagagaaaatagtgtgatattca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
15389842 |
gtgagggctagtagaaattcaagattctacaagaaaatagctgttgattatatatatgcatttcttaggaaaatatgcagagaaaatagtgtgatcttca |
15389941 |
T |
|
| Q |
101 |
atattcctcatgagagtctcttaaatgttggtcaagttttctatgtatagtcccttctttactttgtataaagatcaataagattatttattattttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15389942 |
atattcctcatgagagtctcttaaatgttggtcaagttttctatgtatagtcccttctttactttgtataaagatcaataagattatttattattttgtg |
15390041 |
T |
|
| Q |
201 |
cctgccattttgtgcagagttccagatttttagatatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15390042 |
cctgccattttgtgcagagttccagatttttagatatt |
15390079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 38665524 - 38665404
Alignment:
| Q |
30 |
caagaaaatagttgttgattatatatatgcatttcttaggaagatatgcagagaaaatagtgtgatattcaatattcctcatgagagtctcttaaatgtt |
129 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
38665524 |
caagaaagtagctgttgattacatatatgcatttcttaggaaaatatgcagggaaaatagtgtgatcttcaatgttcctcatgagagtctcttaaatgtt |
38665425 |
T |
|
| Q |
130 |
ggtcaagttttctatgtatag |
150 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
38665424 |
ggtcagatattctatgtatag |
38665404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University