View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3316_low_12 (Length: 240)
Name: NF3316_low_12
Description: NF3316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3316_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 9439653 - 9439510
Alignment:
| Q |
18 |
agtatttggatagtaagaaaaaggtagaagaaaaccagaggttactctgcagagtcagatacaacattttctatccttaaatccattaggatagatcctc |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439653 |
agtatttggatagtaagcaaaaggtagaagaaaaccagaggttactctgcagagtcagatacaacattttctatccttaaatccattaggatagatcctc |
9439554 |
T |
|
| Q |
118 |
ttccactctcccactttcttcttataatttttgcgaattccctc |
161 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
9439553 |
ttccactctcccactttcttcatataattcttgcgaattccctc |
9439510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 9439512 - 9439483
Alignment:
| Q |
200 |
ctccgagggaatatctggtctaaaattctt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9439512 |
ctccgagggaatatctggtctaaaattctt |
9439483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University