View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3316_low_13 (Length: 235)
Name: NF3316_low_13
Description: NF3316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3316_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15398457 - 15398237
Alignment:
| Q |
1 |
ctactagccctcacaactgtgtttcctagtatatgaacaacaccagcttctctagagttgtttaaaaattcaagttcatcaacctcagtacggtgactat |
100 |
Q |
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| T |
15398457 |
ctactagccctcacaactgtgtttcctagtatttgaacaacaccagcttctctttagttgtttaaaaattcaagttcatcaacctctgtattgtgactat |
15398358 |
T |
|
| Q |
101 |
tagaggattgaaaagtaacattcacatttgttggagatctagcaggaactattgaatctactgatgaaatcgaataatccgtattgctcaatgaagttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
15398357 |
tagaggattgaaaagtaacattcacatttgttggtgatctagcaggaactattgaatctactgatgaaattgaataatccttatttctcaatgaagttgt |
15398258 |
T |
|
| Q |
201 |
gtttccatggttattcaatat |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
15398257 |
gtttccattgttattcaatat |
15398237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15389855 - 15389638
Alignment:
| Q |
1 |
ctactagccctcacaactgtgtttcctagtatatgaacaacaccagcttctctagagttgtttaaaaattcaagttcatcaacctcagtacggtgactat |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||| |||||||| |
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| T |
15389855 |
ctactagccctcacaactgtgtttcctagtatgtgaacaacaccagcttctctgcagttgttcaaaaactcaagttcatcaacctccgtatagtgactat |
15389756 |
T |
|
| Q |
101 |
tagaggattgaaaagtaacattcacatttgttggagatctagcaggaactattgaatctactgatgaaatcgaataatccgtattgctcaatgaagttgt |
200 |
Q |
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| T |
15389755 |
tagaggattgaaaagtaacattcacatttgttggtgatctagcaggaactattgaatctactgatgaaatggaataatccatattactcaatgaagttgt |
15389656 |
T |
|
| Q |
201 |
gtttccatggttattcaa |
218 |
Q |
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| T |
15389655 |
gtttccattgttattcaa |
15389638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 38665550 - 38665619
Alignment:
| Q |
11 |
tcacaactgtgtttcctagtatatgaacaacaccagcttctctagagttgtttaaaaattcaagttcatc |
80 |
Q |
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|||||||||||||||||| ||| ||||| || ||||| || || |||| || ||||||||||||||||| |
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| T |
38665550 |
tcacaactgtgtttcctaatatgtgaaccaccccagcatccctgcagttattcaaaaattcaagttcatc |
38665619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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