View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3317_high_1 (Length: 668)

Name: NF3317_high_1
Description: NF3317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3317_high_1
NF3317_high_1
[»] chr4 (1 HSPs)
chr4 (19-656)||(32528136-32528772)


Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 19 - 656
Target Start/End: Complemental strand, 32528772 - 32528136
Alignment:
Q  19 ataggagaatgtcgagcttgcgtgattttgatgatgagtgaatttcagtatatatgcagtttaaatataagtcatgtaaattgaaaacttaattcaacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528772 ataggagaatgtcgagcttgcgtgattttgatgatgagtgaatttcagtatatatgcagtttaaatataagtcatgtaaattgaaaacttaattcaacaa 32528673  T
Q  119 tgctattcattgttcttgctcgttagagcgtactacagtgggtgcaccaaacagaatcgtggaatgaattacttcaagtaattcaactaagctgttattt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528672 tgctattcattgttcttgctcgttagagcgtactacagtgggtgcaccaaacagaatcgtggaatgaattacttcaagtaattcaactaagctgttattt 32528573  T
Q  219 attggaaaaatgagtatgcatgaatgaaatgatgacgtgaattagagcatgcattttcaatagggaatcttttacccaatagaaacttcatccaatgaaa 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||    
T  32528572 attggaaaaatgagtatgcataaatgaaatgatgacgtgaattagagcatgcattttcaatagggaatcttttacccaatagaaacttcatcctattcaa 32528473  T
Q  319 gactttcattagagaaaaacacgagtatatactatatactagttccaacaactatacaaatagggatgtgcaaggccatcactacttttaggttttctcg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528472 gactttcattagagaaaaacacgagtatatactatatactagttccaacaactatacaaatagggatgtgcaaggccatcactacttttaggttttctcg 32528373  T
Q  419 cgatgatgaatgttgactcgagaagatgaatgtttgtccattgttatttcagaactctggcggttacgtcagtggttttggnnnnnnnnnccccatctag 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||    
T  32528372 cgatgatgaatgttgactcgagaagatgaatgtttgtccattgttatttcagaactctggcggttacgtcagtggttttgg-aagaaaaaccccatctag 32528274  T
Q  519 gtaggttcagtttgaaatctttagtttgtggttgtatttcttgcctctgatttctggttctttccaaatctacaactttcaaggcgtttggtttattgcc 618  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32528273 gtaggttcagtttgaaatctttagtttgtggctgtatttcttgcctctgatttctggttctttccagatctacaactttcaaggcgtttggtttattgcc 32528174  T
Q  619 aaccacaatggtggttttgtgtctgttaatatttgatg 656  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32528173 aaccacaatggtggttttgtgtctgttaatatttgatg 32528136  T

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