View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3317_high_2 (Length: 546)
Name: NF3317_high_2
Description: NF3317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3317_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 32528651 - 32528136
Alignment:
| Q |
18 |
gttagagcgtactacagtgggtgcaccaaacagaatcgtggaatgaattacttcaagtaattcaactaagctgttatttattggaaaaatgagtatgcat |
117 |
Q |
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| T |
32528651 |
gttagagcgtactacagtgggtgcaccaaacagaatcgtggaatgaattacttcaagtaattcaactaagctgttatttattggaaaaatgagtatgcat |
32528552 |
T |
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| Q |
118 |
gaatgaaatgatgacgtgaattagagcatgcattttcaatagggaatcttttacccaatagaaacttcatccaatgaaagactttcattagagaaaaaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
32528551 |
aaatgaaatgatgacgtgaattagagcatgcattttcaatagggaatcttttacccaatagaaacttcatcctattcaagactttcattagagaaaaaca |
32528452 |
T |
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| Q |
218 |
cgagtatatactatatactagttccaacaactatacaaatagggatgtgcaaggccatcactacttttaggttttctcgcgatgatgaatgttgactcga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528451 |
cgagtatatactatatactagttccaacaactatacaaatagggatgtgcaaggccatcactacttttaggttttctcgcgatgatgaatgttgactcga |
32528352 |
T |
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| Q |
318 |
gaagatgaatgtttgtccattgttatttcagaactctggcggttacgtcagtggttttggnnnnnnnnnccccatctaggtaggttcagtttgaaatctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32528351 |
gaagatgaatgtttgtccattgttatttcagaactctggcggttacgtcagtggttttgg-aagaaaaaccccatctaggtaggttcagtttgaaatctt |
32528253 |
T |
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| Q |
418 |
tagtttgtggttgtatttcttgcctctgatttctggttctttccaaatctacaactttcaaggcgtttggtttattgccaaccacaatggtggttttgtg |
517 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528252 |
tagtttgtggctgtatttcttgcctctgatttctggttctttccagatctacaactttcaaggcgtttggtttattgccaaccacaatggtggttttgtg |
32528153 |
T |
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| Q |
518 |
tctgttaatatttgatg |
534 |
Q |
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||||||||||||||||| |
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| T |
32528152 |
tctgttaatatttgatg |
32528136 |
T |
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