View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3317_low_1 (Length: 1136)
Name: NF3317_low_1
Description: NF3317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3317_low_1 |
 | |
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| [»] scaffold0178 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 729
Target Start/End: Complemental strand, 26462256 - 26461523
Alignment:
| Q |
1 |
acattgtaagagagaataacatcatgtggtg-tataatcagagaggcagcagtgatgatgagtggattgacaatttttctaaaattttagatgcgtgtag |
99 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || || |
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|
| T |
26462256 |
acattgtaagggagaacaacatcatgcggtggtatcatcagagaggcagcagtgatgatgagtggattgacaacgtctctaaaattttagatgggtacag |
26462157 |
T |
|
| Q |
100 |
ttttattattattaggaaaatacnnnnnnngagtaaattattagaaaaatatcaacgagtgcatttgaatactctttaaaaatcataagttataagtatt |
199 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26462156 |
ttttattattataaggaaaatactttttttgagtaaattattagaaaaatactaacgagtgcatttgaatactctttaaaaatcataagttataagtatt |
26462057 |
T |
|
| Q |
200 |
tataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacattttatctaaaaattgtctaatttaaaatatttgaatactacatgacnnnnnn |
299 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26462056 |
tataaaaatatatgtgttcaatacattaaaaatcaaaatatttaacatttttttaaaaaattgtttaatttaaaatatttgaatactacatgactttttt |
26461957 |
T |
|
| Q |
300 |
nn-attctataatatccgctggacgttataaatcaaattatcgaaatatatgtacctaaaaacatttgatgaataaacacttaacttcatc---tattgt |
395 |
Q |
| |
|
| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26461956 |
tttactctataatatccgctgaacgttataactcaaattatcaaaatatatgtacctaagaacatttgatgaataaacacttaacttcatcatctattgt |
26461857 |
T |
|
| Q |
396 |
aagtcaaatttatggacatctattgagattaaattaaatccaactacatttcttaatcgagaataagtcagtgtccttctcaatgggtcagtttccacct |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461856 |
aagtcaaatttatggacatctattgagattaaattaaatctaactacatttcttaatcgagaataagtcagtgtccttctcaatgggtcagtttccacct |
26461757 |
T |
|
| Q |
496 |
aaaacaattttataattggtgattaatttgtcttttgttaacaagaagttattgttacaacaacaatccatactttaacttacatctaaatctaaactaa |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461756 |
aaaacaattttataattggtgattaatttgtcttttgttaacaagaagttattgttacaacaacaatccatactttaacttacatctaaatctaaactaa |
26461657 |
T |
|
| Q |
596 |
aaatccttgaccccctcaacatcggccactgaatccttccaatgttcttagctttctcatctctccacgtggcacttacaccctattcataggcctatgc |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461656 |
aaatccttgaccccctcaacatcggccactgaatccttccaatgttcttagctttctcatctctccacgtggcacttacaccctattcataggcctatgc |
26461557 |
T |
|
| Q |
696 |
cggttccgattagtcatcatcctcaaacatatac |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26461556 |
cggttccgattagtcatcatcctcaaacatatac |
26461523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 768 - 1136
Target Start/End: Complemental strand, 26461484 - 26461116
Alignment:
| Q |
768 |
tcacataacttgttacattagtttactagatttgatattaattattagcacacggtccccaatcaataattcttctatacaccacctatattgatgtaaa |
867 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461484 |
tcacataacttgttacattagtttactagatttgatattaattattagcacacggtccccaatcaataattcttctatacaccacctatattgatgtaaa |
26461385 |
T |
|
| Q |
868 |
cttggctttaaattgactttcataacaaccataagttagttgagtagcccttcttaaaaaggaagaccctatgggatgctaatatacccattttcattag |
967 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461384 |
cttggctttaaattgactttcataacaaccataagttagttgagtagcccttcttaaaaaggaagaccctatgggatgctaatatacccattttcattag |
26461285 |
T |
|
| Q |
968 |
tgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgctgcagcactagtgatccaacaccctagtgg |
1067 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461284 |
tgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgctgcagcactagtgatccaacaccctagtgg |
26461185 |
T |
|
| Q |
1068 |
gaagattgagagattgtattggtcagtgagtgcaagttatgtcataagagccaatcctggttattatgt |
1136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
26461184 |
gaagattgagagattgtattggtcagtgagtgcaagttatgtcatgagagcaaatcctggttattatgt |
26461116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 8108263 - 8108320
Alignment:
| Q |
193 |
aagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt |
250 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
8108263 |
aagtatttatgaaaatgtgtgtaatcaatatatccaaaatcaaaatatttaacttttt |
8108320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 40065772 - 40065856
Alignment:
| Q |
166 |
gaatactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt |
250 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||||| |||| ||| || ||||||||||||||||||||||| |||| |
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|
| T |
40065772 |
gaatactatttaagaatcataagtggtaagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttt |
40065856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 29866443 - 29866494
Alignment:
| Q |
191 |
ataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt |
242 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
29866443 |
ataagtatttatgaaaatgtatgtattcaatatatttaaaatcaaaatattt |
29866494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 25958538 - 25958464
Alignment:
| Q |
168 |
atactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt |
242 |
Q |
| |
|
||||| ||||| || ||||| | |||||||||| ||||||||| |||| ||||||||||| |||||||||||||| |
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|
| T |
25958538 |
atactttttaagaaccataaatgataagtatttttaaaaatgtgtgtgatcaatatattgtaaatcaaaatattt |
25958464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 50775070 - 50774994
Alignment:
| Q |
174 |
tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt |
250 |
Q |
| |
|
||||| |||||||||| |||| ||||||| ||||| | ||| ||||||| ||||||||||||||||||||| |||| |
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|
| T |
50775070 |
tttaagaatcataagtaataaatatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttt |
50774994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 2137300 - 2137227
Alignment:
| Q |
169 |
tactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt |
242 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||| ||||| | ||| |||||||||| |||||||||||||| |
|
|
| T |
2137300 |
tactgtttaagaatcataagtaataagtatttatgaaaatatgtgtaatcaatatattataaatcaaaatattt |
2137227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 42627941 - 42628012
Alignment:
| Q |
174 |
tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaac |
245 |
Q |
| |
|
||||||||| |||||| |||||||| || ||||| | | | |||||| ||||||||||||||||||||||| |
|
|
| T |
42627941 |
tttaaaaattataagtggtaagtattaatgaaaatatgtatattcaatgtattgaaaatcaaaatatttaac |
42628012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 34652463 - 34652534
Alignment:
| Q |
173 |
ctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaa |
244 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||| ||||| ||| ||||||| |
|
|
| T |
34652463 |
ctttaaaaattataagtaatagatttttataaaaatatatgtattcaatatattaaaaattaaactatttaa |
34652534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 15961 - 15908
Alignment:
| Q |
191 |
ataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaa |
244 |
Q |
| |
|
|||| ||||||||||||||| ||| || || |||||||||||||||||||||| |
|
|
| T |
15961 |
ataaatatttataaaaatgtgtgtatttgatgtattgaaaatcaaaatatttaa |
15908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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