View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3317_low_4 (Length: 316)
Name: NF3317_low_4
Description: NF3317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3317_low_4 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold2079 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 6325527 - 6325840
Alignment:
| Q |
1 |
taggatattacaaatctcaaatgaccattttacctcatatagtacaacagcatgacaaaaaatagaaactcatacaacaaaatgaaaatacaacacacta |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6325527 |
taggatattacaaatttcaaatgaacattttacatcata--gtacaacagcatgacaaaaaatagaaactcatacaacaaaatgaaaatacaacacactg |
6325624 |
T |
|
| Q |
101 |
aaattaatttctctagataggaagcgacctaactgcaggtaactcggaaataccactctcaattttaccctcaaaaactttcttgatcctttctggaatc |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6325625 |
aaattaatttctttatataggaagcgacctaactacaggtaactcggaaataccactctcagttttaccctcaaaaactttcttgatcctttctggaatc |
6325724 |
T |
|
| Q |
201 |
cattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6325725 |
cattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccatta |
6325824 |
T |
|
| Q |
301 |
aagctaaaattgaaac |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6325825 |
aagctaaaattgaaac |
6325840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 6333013 - 6333317
Alignment:
| Q |
1 |
taggatattacaaatctcaaatgaccattttacct--catat---agtacaacagcatgacaaaaaatagaaactcatacaacaaaatgaaaatacaaca |
95 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||| ||||||||| ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
6333013 |
taggatattacaaatctcaaatgaacattttacatatcatagtacagtacaacaacatgataaaaaatagaatctcatacaacaaaatgaaa-------- |
6333104 |
T |
|
| Q |
96 |
cactaaaattaatttctctagataggaagcgacctaactgcaggtaactcggaaataccactctcaattttaccctcaaaaactttcttgatcctttctg |
195 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| | | | ||||||||| ||||||||||||||||||| |
|
|
| T |
6333105 |
--------ttaatttctctagataggaatcgacctaactgcaggtaactccgaatcgccactctgagtctgaccctcaaacactttcttgatcctttctg |
6333196 |
T |
|
| Q |
196 |
gaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataac |
295 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||| || ||||| | |
|
|
| T |
6333197 |
gaatcaattgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaattat |
6333296 |
T |
|
| Q |
296 |
cattaaagctaaaattgaaac |
316 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
6333297 |
catcaaagctaaaactgaaac |
6333317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 6242966 - 6242854
Alignment:
| Q |
180 |
ttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaa |
279 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| ||| | |||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
6242966 |
ttcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatccaagcaa |
6242867 |
T |
|
| Q |
280 |
ttgtcggcgaaat |
292 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6242866 |
ttgtcggcgaaat |
6242854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 6346285 - 6346434
Alignment:
| Q |
167 |
accctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaa |
266 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
6346285 |
accctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaa |
6346384 |
T |
|
| Q |
267 |
taaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaac |
316 |
Q |
| |
|
||||||| |||||||| || ||||| | ||| ||||||| || |||||| |
|
|
| T |
6346385 |
aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaac |
6346434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 6219828 - 6219676
Alignment:
| Q |
167 |
accctcaaaaactttcttgatcctttctggaatcca---ttgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaaccc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| || ||| | ||| |||||||||||||| ||||| |||||||| || | | |
|
|
| T |
6219828 |
accctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagtaagatccacaagcac |
6219729 |
T |
|
| Q |
264 |
aaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaac |
316 |
Q |
| |
|
||| ||||||| |||||||| || ||||| | ||| ||||||| || |||||| |
|
|
| T |
6219728 |
aaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaac |
6219676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6220006 - 6219929
Alignment:
| Q |
1 |
taggatattacaaatctcaaatgaccattttacctcatatagtacaacagcatgac-aaaaaatagaaactcatacaacaaaa |
82 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| |||||| |||| | |||| ||||||||||||||||| |||||||| |
|
|
| T |
6220006 |
taggatattacaaatttcaaatgaacattttacatcatat-----aacaacttgacaaaaaaatagaaactcattcaacaaaa |
6219929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 316
Target Start/End: Complemental strand, 1106 - 1048
Alignment:
| Q |
258 |
aaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaac |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
1106 |
aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaac |
1048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University