View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3317_low_5 (Length: 253)
Name: NF3317_low_5
Description: NF3317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3317_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 52290316 - 52290077
Alignment:
| Q |
14 |
caaaggtcaagaaagtgaaatccaaaggccggaaaagtacatccgacgttccttcaagaagaagtgagtttctaattgataaaatcaatgaagaggaaag |
113 |
Q |
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| T |
52290316 |
caaaggtcaagaaagtgaaatccaaaggccggaaaagtacatccgacgttccttcaagaagaagtgagtttctaattgataaaatcaatgaagaggaaag |
52290217 |
T |
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| Q |
114 |
tgaatcgttgatttcttgcttagcaagattctcggaagacgagaaggtccattcgtctagtactatggacagtaaagttaaggctatctcaaattttagt |
213 |
Q |
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| T |
52290216 |
tgaatcgttgatttcttgcttagcaagattctcggaagacgagaaggtccattcgtctagtactatggacagtaaagttaaggctatctcaaattttagt |
52290117 |
T |
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| Q |
214 |
gataaaaaggagaatagagatttaactagcgcaaatagaa |
253 |
Q |
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| T |
52290116 |
gataaaaaggagaataaagatttaactagcgcaaatagaa |
52290077 |
T |
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