View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3318_high_2 (Length: 483)
Name: NF3318_high_2
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_high_2 |
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| [»] scaffold0013 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 13054292 - 13053812
Alignment:
| Q |
1 |
tctctatctctttcttcctatgatctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatattcaattac |
100 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13054292 |
tctctatctcgttcttcctatgctctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatattcaattac |
13054193 |
T |
|
| Q |
101 |
aatgtctgcgaaaaattcggtgggattcagtacctgcaaataaataacaaaggtaattagtttatattaaattcgagtgttttgtgtgtctaatgagact |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13054192 |
aatgtctgcgaaaaattcagtgggattcagtacctgcaaataaataacaaaggtaattagtttatattaaattcgagtgttttgtgtgtctaatgagact |
13054093 |
T |
|
| Q |
201 |
acacaagactatatttattagtacaatccttacttctaaccattcttgagctcgtgccggctcccatgatggcataccaccttttttaccctgcaagaat |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13054092 |
acacaagactatatttattagtacaatcctcacttctaaccattcttgagctcgtgcccgctcccatgatggcataccaccttttttaccctgcaagaat |
13053993 |
T |
|
| Q |
301 |
gaaagaaaaaagtaaatgatcaaactcatttgcacaattcgcgcatttccgttgatgaagtaacatgttaaaagatcaataattcgtcaatgtatcaagt |
400 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
13053992 |
gaaagaaaaaagtaaatgatcaaactcatgtgcacaattcgcacatttccgttgatgaagtaacatgttaaaagatcaataattcgtcaatgtattaatt |
13053893 |
T |
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| Q |
401 |
aaaactatatggctataagttgaatagtagaacttacctgaagtgacaacagaagattgactgaatcatataacctctctg |
481 |
Q |
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| T |
13053892 |
aaaactatatggctataaattgaatagtagaacttacctgaagtgacaacagaagattgactgaatcatataacctctctg |
13053812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 105815 - 105651
Alignment:
| Q |
1 |
tctctatctctttcttcctatgatctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatattcaattac |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||||||| |||| |||| || |
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| T |
105815 |
tctctatctctttcttcctatgccctggatatagcttcttgaacaaaactaaagcttgaattgctgatccagtgcactcaacatattcatgctcaacaac |
105716 |
T |
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| Q |
101 |
aatgtctgcgaaaaattcggtgggattcagtacctgcaaataaataacaaaggtaattagtttat |
165 |
Q |
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| T |
105715 |
aatgtccgcaaaaaactcagtgggattgagtagctgaaaataaataataaaggtaattagtttat |
105651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 166352 - 166188
Alignment:
| Q |
1 |
tctctatctctttcttcctatgatctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatattcaattac |
100 |
Q |
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|||||||||||||||||||||| |||||||||| || || |||| || |||||||||||| |||| | |||||||||||||||| |||| ||||| ||| |
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| T |
166352 |
tctctatctctttcttcctatgccctggatatagtttcttaaacaaaattaaagcttgaatcgccgatgcagtgcactcaacatattcatgttcaactac |
166253 |
T |
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| Q |
101 |
aatgtctgcgaaaaattcggtgggattcagtacctgcaaataaataacaaaggtaattagtttat |
165 |
Q |
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| T |
166252 |
aatgtccacaaaaaattctgtgggattgagtacctgaaaataaataacaaagctaatcagtttat |
166188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 105601 - 105534
Alignment:
| Q |
229 |
cttacttctaaccattcttgagctcgtgccggctcccatgatggcataccaccttttttaccctgcaa |
296 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||| || || |||||| ||||||| |||||| |
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| T |
105601 |
cttacttctaaccactcttgagctcctgcgggctcccatgctgccaaaccaccctttttactctgcaa |
105534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 90958 - 91119
Alignment:
| Q |
3 |
tctatctctttcttcctatgatctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcatattcaattacaa |
102 |
Q |
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|||||||| ||||||||||| ||||||||||||| ||||||| ||||||||||| ||| | | |||||||||||||||||| |||| ||||||||| | |
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| T |
90958 |
tctatctcgttcttcctatgccctggatatagcttcttgaacaaaactaaagcttcaatcgttgttccagtgcactcaacatattcatgttcaattacca |
91057 |
T |
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| Q |
103 |
tgtctgcgaaaaattcggtgggattcagtacct-gcaaataaataacaaaggtaattagttt |
163 |
Q |
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|||| |||||| ||| |||||||| |||| || | ||||||| || |||| |||||||||| |
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| T |
91058 |
tgtcctcgaaaagttctgtgggatttagtagctggaaaataaacaagaaagctaattagttt |
91119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 437 - 476
Target Start/End: Original strand, 91412 - 91451
Alignment:
| Q |
437 |
cctgaagtgacaacagaagattgactgaatcatataacct |
476 |
Q |
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| T |
91412 |
cctgaagtgacaacaggagattgactgaatcatataacct |
91451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 91200 - 91272
Alignment:
| Q |
220 |
agtacaatccttacttctaaccattcttgagctcgtgccggctcccatgatggcataccaccttttttaccct |
292 |
Q |
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| T |
91200 |
agtacaatacttacttctaaccattcttgacctcctgctggctcccaagctgccaatccaccatttttaccct |
91272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 12136081 - 12136168
Alignment:
| Q |
3 |
tctatctctttcttcctatgatctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcat |
90 |
Q |
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| T |
12136081 |
tctatctctttcttcctatgctctggatataatttcttgaacaaaactaaagcttgaattgccgatccagtgcaatcaacatattcat |
12136168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 5653029 - 5653095
Alignment:
| Q |
24 |
tctggatatagcttattgaacataactaaagcttgaattgccggtccagtgcactcaacatactcat |
90 |
Q |
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| T |
5653029 |
tctggatatagcttcttaaacaaaactaaggcttgaattgctgatccagtgcattcaacatattcat |
5653095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 5687970 - 5688040
Alignment:
| Q |
231 |
tacttctaaccattcttgagctcgtgccggctcccatgatggcataccaccttttttaccctgcaagaatg |
301 |
Q |
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|||||| ||||||||| ||||| || ||||||||| | ||| | ||||||||||||||||||||| |||| |
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| T |
5687970 |
tacttccaaccattctagagcttttgacggctcccaagctggtaaaccaccttttttaccctgcaaaaatg |
5688040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 5653927 - 5653967
Alignment:
| Q |
432 |
acttacctgaagtgacaacagaagattgactgaatcatata |
472 |
Q |
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|||| ||||||||||||||| || ||||||||||||||||| |
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| T |
5653927 |
actttcctgaagtgacaacacaaaattgactgaatcatata |
5653967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 5720086 - 5720158
Alignment:
| Q |
229 |
cttacttctaaccattcttgagctcgtgccggctcccatgatggcataccaccttttttaccctgcaagaatg |
301 |
Q |
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|||||||| ||||||||| ||||| || ||||||||| | ||| | |||||| |||||||||||||| |||| |
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| T |
5720086 |
cttacttccaaccattctagagcttttgacggctcccaagctggtaaaccaccctttttaccctgcaaaaatg |
5720158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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