View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3318_high_3 (Length: 474)
Name: NF3318_high_3
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 27440576 - 27440998
Alignment:
| Q |
20 |
aagagcatcatacacgtatcgtcagatatttcccaaaacttatagtatccaataatttattgtaattctttcgcaaaatatttcctgtgatacttcacaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440576 |
aagagcatcatacacgtatcgtcagatatttcccaaaacttatagtatccaataatttattgtaattctttcgcaaaatatttcc--------------- |
27440660 |
T |
|
| Q |
120 |
atacatcttcgatacttttttaccaactaagcacgcaattgtcatctagatatgatatatcttactacttatagacacaacgagcatcatacaaattttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27440661 |
-------ttcgatacttttttaccaactaagcacgcaattgtcatctagatatgatatatcttactacttatagacacaacgagcatcatacaaattcat |
27440753 |
T |
|
| Q |
220 |
atttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440754 |
atttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactag |
27440853 |
T |
|
| Q |
320 |
gaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagtt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440854 |
gaggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagtt |
27440953 |
T |
|
| Q |
420 |
gattattttatttcaaattatttttaatgataactatgacctatg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27440954 |
gattattttatttcaaattatttttaatgataactatgacctatg |
27440998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 63 - 433
Target Start/End: Original strand, 27429139 - 27429518
Alignment:
| Q |
63 |
agtatccaataatttattgtaattctttcgcaaaatatttcctgtgatacttcacaaatacatcttcgatacttttttaccaactaagcacgcaattgtc |
162 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||| ||| ||||| | ||||||| ||| |||||| |||| ||||||||| |||||||| |
|
|
| T |
27429139 |
agtatccaataatttattctcattctttctagaaatatttccactgaaacttctcgaatacattttcattactttcgtaccgactaagcacacaattgtc |
27429238 |
T |
|
| Q |
163 |
atctagatatgatatatcttactacttatagacacaacgagcatcat---------acaaatttttatttggatttaggtggaaatgaactcatcatggc |
253 |
Q |
| |
|
||||| |||||||| ||||||||| | ||||| ||| | | || |||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
27429239 |
atctatatatgatacatcttactaatcatagagacacagtgttatatgtttttgttacaaatttttgtttggatttaggtggagatgaacccatcatggc |
27429338 |
T |
|
| Q |
254 |
atcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactaggaggctacaaactaagttggggttcgcctgcagt |
353 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
27429339 |
aacaggggaaactaagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactaggaggatacaaactaagttggggttcgcctacagt |
27429438 |
T |
|
| Q |
354 |
gatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagttgattattttatttc |
433 |
Q |
| |
|
|||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
27429439 |
gatggagaatccaattctgcacgaaattgcagaggctagaaagaagagtgtagcccaggtgcagctcattattttatttc |
27429518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 27443574 - 27443801
Alignment:
| Q |
222 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactagga |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27443574 |
ttggatttaggtggaaatgaactcatcatggcatcaggggaaactcagagaattctgcaagcagaaaggaattcatgtgagtgcatggtcaccactagga |
27443673 |
T |
|
| Q |
322 |
ggctacaaactaagttggggttcgcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagttga |
421 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| | | |
|
|
| T |
27443674 |
ggatacaaactaagttttggttcgcctgcagtgatggagaattcaattctgcgagaaattgctgaggctagaaagaaaagtgtagcccaggtgcagctca |
27443773 |
T |
|
| Q |
422 |
ttattttatttcaaattatttttaatga |
449 |
Q |
| |
|
||||||||||||||| |||||| ||||| |
|
|
| T |
27443774 |
ttattttatttcaaactattttcaatga |
27443801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 344
Target Start/End: Complemental strand, 26911221 - 26911095
Alignment:
| Q |
218 |
ttatttggatttaggtggaaatgaactcatcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccact |
317 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||||| | ||||| || |||||||||| | |||||||||| |||||| |||||||||||||| | |
|
|
| T |
26911221 |
ttatttggatttaggtagaaatgaatccatcttggcatcaagaaaaactcagggaattctgcatgaagaaaggaattcatgtgtgtgcatggtcaccatt |
26911122 |
T |
|
| Q |
318 |
aggaggctacaaactaagttggggttc |
344 |
Q |
| |
|
|||| |||||| || ||||||||| |
|
|
| T |
26911121 |
gggagcatacaaagtattttggggttc |
26911095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 26911093 - 26911054
Alignment:
| Q |
378 |
aattgctgaggctagaaagaagagtgtagcccaggtgcag |
417 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
26911093 |
aattgctgaggctagaaataagagtgtagctcaggtgcag |
26911054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University