View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3318_high_4 (Length: 413)
Name: NF3318_high_4
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 7499947 - 7499702
Alignment:
| Q |
20 |
atagtaatacaaaaactccatgtgtgatctttccaaactataaaaataaaatttcacacgactgaaaaatatttgatctatttcggctgctgagnnnnnn |
119 |
Q |
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| T |
7499947 |
atagtaatacaaaaactccatgtgtgatctttccaaactataaaaataaaatttcacacgactgaaaaatatttgatctatttcggctgctaagaaaaaa |
7499848 |
T |
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| Q |
120 |
nntaatgggaaaaattattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgtttatatatggcactatctgttaatacatgg |
219 |
Q |
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| T |
7499847 |
aataatgggaaaaattattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatat-gcactatctgttaatacatgg |
7499749 |
T |
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| Q |
220 |
ctggctttagaatgatgtctcagttttttatgtttcttgatcatgaa |
266 |
Q |
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| T |
7499748 |
ctggttttagaatgatgtctcagttttttatgtttctagatcatgaa |
7499702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 7488416 - 7488311
Alignment:
| Q |
265 |
aacatgtctgatagccatagtctcatgattctttataaaacaataccctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttctttt |
364 |
Q |
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| T |
7488416 |
aacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctctttt |
7488317 |
T |
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| Q |
365 |
ccaaca |
370 |
Q |
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| T |
7488316 |
ccaaca |
7488311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 8139017 - 8139134
Alignment:
| Q |
122 |
taatgggaaaaattattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattg-tttatatatggcactatctgttaatacatggc |
220 |
Q |
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| T |
8139017 |
taatgggaaaaattattcttccgtaacagttctaaagtttctgtggc-------tctcatctaattgttttatgtat-gcactatcagttaatacatggc |
8139108 |
T |
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| Q |
221 |
tggctttagaatgatgtctcagtttt |
246 |
Q |
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| T |
8139109 |
tgactttggaattatgtctcagtttt |
8139134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 371
Target Start/End: Original strand, 6943675 - 6943733
Alignment:
| Q |
313 |
tatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaa |
371 |
Q |
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| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaa |
6943733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 8139168 - 8139198
Alignment:
| Q |
233 |
gatgtctcagttttttatgtttcttgatcat |
263 |
Q |
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| T |
8139168 |
gatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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