View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3318_high_7 (Length: 253)
Name: NF3318_high_7
Description: NF3318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3318_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 29234518 - 29234708
Alignment:
| Q |
1 |
tttaatttattcaacatgtgtccttgcgagcttaactcttttatttgaaacaatacatgatatatgcaaagtttgtgattcaaactccaaccaccaaaat |
100 |
Q |
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| T |
29234518 |
tttaaattattcgacatgtctccttgcaagcttaactctgttagtaaaaacaatatattgtatatgtaaggtctgagattcaaacctcaactaccaaaat |
29234617 |
T |
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| Q |
101 |
aattattcaacatgtcattgcaattaaagttggttataagttataaccatcaccctaatactaataagagttgttgtttattattacaata |
191 |
Q |
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| T |
29234618 |
aattattcaacatgtcattgcaattaaagttgattataagttataaccatcaccctaatactaataagagttgttgtttattattacaata |
29234708 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 34899663 - 34899617
Alignment:
| Q |
50 |
acaatacatgatatatgcaaagtttgtgattcaaactccaaccacca |
96 |
Q |
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| T |
34899663 |
acaatacataatatatgcaaagtttggggttcaaactccgaccacca |
34899617 |
T |
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